View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_low_18 (Length: 273)
Name: NF14656_low_18
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 29382382 - 29382636
Alignment:
| Q |
18 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29382382 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccctgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
29382481 |
T |
|
| Q |
118 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtaattattgaataagatttaaacaaagtcaataaagctcgatctagacaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29382482 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtgattattgaataagatttgaacaaagtcaataaagctcgatctagacaat |
29382581 |
T |
|
| Q |
218 |
taaaacaaaatttgaatacataattgtaaaattcacaagactaattggatcagaa |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29382582 |
taaaacaaaatttgaatacataattgtaaaattcacaagactaattggatcagaa |
29382636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 29258277 - 29258391
Alignment:
| Q |
20 |
tttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaa------ccaaagctgacgcaaccccaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| | || ||||||||||||||||| || |
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| T |
29258277 |
tttaaagaatgagaaaggaagtttctcacacagaagccagttttgaccatgaacaattccatagaagctcaaatcaaagtcaaagctgacgcaacccaaa |
29258376 |
T |
|
| Q |
114 |
tcttcaagtaccaat |
128 |
Q |
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||||||||||||||| |
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| T |
29258377 |
tcttcaagtaccaat |
29258391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 24398 - 24651
Alignment:
| Q |
18 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
117 |
Q |
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|||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
24398 |
tgtttaaataatgagaaatgaagtttctcacacagaagcctgttttgaccatgaaaaattccatagaagctccaaccaaagctgacgcaaccccaatctt |
24497 |
T |
|
| Q |
118 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtaattattgaataagatttaaacaaagtcaataaagctcgatctagacaat |
217 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||| || ||||||||||||| |||||||||||||| |
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| T |
24498 |
aaagtaccaatcgagaaacatcgttttcaactggacgaaattgcaaaagtgattattgagtaagatttgaaaaaagtcaataaagttcgatctagacaat |
24597 |
T |
|
| Q |
218 |
taaaacaaaatttgaatacataattgtaaaattcacaagactaattggatcaga |
271 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
24598 |
taaaacaaaatttgaatacataactgtaaaatccacaagactaattgaatcaga |
24651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 21359402 - 21359149
Alignment:
| Q |
18 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||||| |
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| T |
21359402 |
tgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatgaaaaattcgatagaagctccaccaaaagctgacgcaaccccaatctt |
21359303 |
T |
|
| Q |
118 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtaattattgaataagatttaaacaaagtcaataaagctcgatctagacaat |
217 |
Q |
| |
|
||||||||||||||||||| ||| |||||||| ||| ||||||||||||| |||||||| |||||||| || ||||||| ||||| |||||||||||||| |
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| T |
21359302 |
caagtaccaatcgagaaacatcgatttcaactcgacgaaattgcaaaagtgattattgagtaagatttgaaaaaagtcattaaagttcgatctagacaat |
21359203 |
T |
|
| Q |
218 |
taaaacaaaatttgaatacataattgtaaaattcacaagactaattggatcaga |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
21359202 |
taaaacaaaatttgaatacataattgtaaaatccacaagactaattgaatcaga |
21359149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 21360901 - 21361154
Alignment:
| Q |
18 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||| |
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| T |
21360901 |
tgtttaaagaatgagaaaggaagtttctcacacagaagcatgttttgaccatgaaaaattccgtagaagctccacccaaagctgacgcaaccccaatctt |
21361000 |
T |
|
| Q |
118 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtaattattgaataagatttaaacaaagtcaataaagctcgatctagacaat |
217 |
Q |
| |
|
||||||||||| |||||| | | |||||||||||| ||||||||||||| |||||||| |||||||| || ||||||||||||| |||||||||||||| |
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| T |
21361001 |
caagtaccaatttagaaacattgatttcaactggacgaaattgcaaaagtgattattgagtaagatttgaaaaaagtcaataaagttcgatctagacaat |
21361100 |
T |
|
| Q |
218 |
taaaacaaaatttgaatacataattgtaaaattcacaagactaattggatcaga |
271 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||| |||||| |
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| T |
21361101 |
taaaacaaaatttgaatacataactgtaaaatccacaagactaattgaatcaga |
21361154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 21347586 - 21347802
Alignment:
| Q |
18 |
tgtttaaagaatgagaaaggaagtttctcacacagaaccttgttttgaccatgaaaaattccatagaagccccaaccaaagctgacgcaaccccaatctt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21347586 |
tgtttaaagaatgagaaaggaagtttctcacacagaagcctgttttgaccatgaaaaattccatagaagctccaaccaaagctgacgcaaccccaatctt |
21347685 |
T |
|
| Q |
118 |
caagtaccaatcgagaaacttcgttttcaactggacaaaattgcaaaagtaattattgaataagatttaaacaaagtcaataaagctcgatctagacaat |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||| |||||||||| | | ||||| |||||||| || || |||||||||| |||||||||||||| |
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| T |
21347686 |
caagtaccaatcgagaaacttcattttcaaccggacgaaattgcaaa---actgattgagtaagatttgaaaaatgtcaataaagttcgatctagacaat |
21347782 |
T |
|
| Q |
218 |
taaaacaaaatttgaataca |
237 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
21347783 |
taaaacaaaatttgaataca |
21347802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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