View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_low_20 (Length: 259)
Name: NF14656_low_20
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 15149376 - 15149507
Alignment:
| Q |
118 |
aacatcatgttttcacacaacctaacaaatcattcataattcaacattaaattttcttcaaaccaaaccaaacaagtttcttctcctctccaatctcata |
217 |
Q |
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| T |
15149376 |
aacatcatgttttcacacaacctaacaaatcattcataattcaacattaaattttcttcaaaccaaaccaaacaagtttcttctcctctccaatctcata |
15149475 |
T |
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| Q |
218 |
accacttctcctaatcaccaatgggatcgctt |
249 |
Q |
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| T |
15149476 |
accacttctcctaatcaccaatgggatcgctt |
15149507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 15153815 - 15153918
Alignment:
| Q |
138 |
cctaacaaatcattcataattcaacattaaattttcttcaaaccaaaccaaacaagtttcttctcctctccaatctcataaccacttctcctaatcacca |
237 |
Q |
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| T |
15153815 |
cctaacaaaccattcataattcaaccttcaattttctacaaaccaaaccacaaaactttcttctcctcctccatatcataactacttattttaatcacca |
15153914 |
T |
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| Q |
238 |
atgg |
241 |
Q |
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|||| |
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| T |
15153915 |
atgg |
15153918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 15149274 - 15149311
Alignment:
| Q |
16 |
ctggcttcatttcataaacagggaaacaaaaacgaatt |
53 |
Q |
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| T |
15149274 |
ctggcttcatttcataaacagggaaacaaaaacgaatt |
15149311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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