View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14656_low_23 (Length: 237)

Name: NF14656_low_23
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14656_low_23
NF14656_low_23
[»] chr7 (2 HSPs)
chr7 (1-221)||(6368747-6368967)
chr7 (1-221)||(6377212-6377432)
[»] scaffold0929 (1 HSPs)
scaffold0929 (4-219)||(186-401)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6368747 - 6368967
Alignment:
Q  1 ttgtagaagttgcaggcaaacttgctgattcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttct 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368747 ttgtagaagttgaaggcaaacttgctgattcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttct 6368846  T
Q  101 aaataaagggtaggaaaatggtgtgacagtgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6368847 aaataaagggtaggaaaatggtgtgacagtgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttgatgtgtttttacca 6368946  T
Q  201 aagagaagttccatagcttcg 221  Q
    |||||||||||||||||||||    
T  6368947 aagagaagttccatagcttcg 6368967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6377212 - 6377432
Alignment:
Q  1 ttgtagaagttgcaggcaaacttgctgattcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttct 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6377212 ttgtagaagttgaaggcaaacttgctgattcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttct 6377311  T
Q  101 aaataaagggtaggaaaatggtgtgacagtgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttacca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6377312 aaataaagggtaggaaaatggtgtgacagtgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttgatgtgtttttacca 6377411  T
Q  201 aagagaagttccatagcttcg 221  Q
    |||||||||||||||||||||    
T  6377412 aagagaagttccatagcttcg 6377432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0929 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: scaffold0929
Description:

Target: scaffold0929; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 219
Target Start/End: Original strand, 186 - 401
Alignment:
Q  4 tagaagttgcaggcaaacttgctgattcatttaaaagatcaaatgcagtggatggttgattggattgtttaatgtttttcatggatgaaggatttctaaa 103  Q
    ||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||    
T  186 tagaagttgaaggcaaacttgctgattcatttaaatcatcaaatgcagtggatggttgattggtttttttaatgtttttcaaggatgaaggatttctaaa 285  T
Q  104 taaagggtaggaaaatggtgtgacagtgaagacaagtattgcaaaaattgctaataatgttacttttggaatcatttgttttggtgtgtttttaccaaag 203  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  286 taaagggtaggaaagtggtgtgacagtgaagacaagtattgcaaaaattgctagtaatgttacttttggaatcatttgttttggtgtgtttttaccaaag 385  T
Q  204 agaagttccatagctt 219  Q
    ||||||||||||||||    
T  386 agaagttccatagctt 401  T

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