View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14656_low_3 (Length: 622)
Name: NF14656_low_3
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 599
Target Start/End: Original strand, 1607298 - 1607886
Alignment:
| Q |
13 |
caaaccttgtcttatattttctcttagcagcagcatttaacgcagcttgccccgtcttgtattgtccagaaccatctcttgccaccacaagattgtactt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
1607298 |
caaaccttgtcttatattttctcttagcagcagcatttaaagcagcctgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactt |
1607397 |
T |
|
| Q |
113 |
tactggaccctttgactgccaaagattcctttcatgcacagaaaaccaatttggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnn |
212 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
1607398 |
tactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacgaatccagaaatttt |
1607497 |
T |
|
| Q |
213 |
nattagtatgactatatatat--tcatataaaaagttcataagcgatagtgttatgacatcaatattatcatatgaatcatctgaaaagctggggtttac |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||| |||| | |||| |
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| T |
1607498 |
gattagtatgactatatatatattcatataaaaagtacataagcgatagtgttatgacatcaatattatcatatgaatcaaatttaaatctggagattac |
1607597 |
T |
|
| Q |
311 |
aaaattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtctt |
410 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607598 |
aaaattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtctt |
1607697 |
T |
|
| Q |
411 |
gttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatttgacaaaataaacattccataatttatctttca |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
1607698 |
gttattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacattccataatttatctttca |
1607797 |
T |
|
| Q |
511 |
tttaattcttcctaaataaagttattgaataactttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagt |
599 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1607798 |
tttaattcttcctaaataaagttattgaataactttttagcagcacaatacttaaattttaaatagaaaaatataaaatcattgttagt |
1607886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 572
Target Start/End: Original strand, 1630294 - 1630852
Alignment:
| Q |
13 |
caaaccttgtcttatattttctcttagcagcagcatttaacgcagcttgccccgtcttgtattgtccagaaccatctcttgccaccacaagattgtactt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
1630294 |
caaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgtactt |
1630393 |
T |
|
| Q |
113 |
tactggaccctttgactgccaaagattcctttcatgcacagaaaaccaatttggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnn |
212 |
Q |
| |
|
||||||| ||| |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
1630394 |
tactggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttgaaaatgacccttcttctgtttctgcaagtgacgaatccaaaattttt |
1630493 |
T |
|
| Q |
213 |
nattagtatgactatatatattcatataaaaagttcataagcgatagtgttatgacatcaatattatcatatgaatcatctgaaaagctggggtttacaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||| |||||||||| || ||| |||| | |||||| |
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|
| T |
1630494 |
gattagtatgactatatatattcatataaaa-gtacataagcgatagtgctatgacttcaatattattatatgaatcaaatgtaaatctggagattacaa |
1630592 |
T |
|
| Q |
313 |
aattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgt |
412 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
1630593 |
aattttaacattttttttaggaaaaaattaaaacattatatacctaaaatattgaatatacttgaacatctacacattataattgctctttgtgtcttct |
1630692 |
T |
|
| Q |
413 |
tattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatttgacaaaataaacattccataatttatctttcatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||| |
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|
| T |
1630693 |
tattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatgtcacaaaataaacactcaataatttatctttcatt |
1630792 |
T |
|
| Q |
513 |
taattcttcctaaataaagttattgaataactttttagcagtacaatacttaaattttaa |
572 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1630793 |
taattcttcctgaataaagttattgaataaccttttagcagtacaatacttaaattttaa |
1630852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 597
Target Start/End: Original strand, 1624319 - 1624891
Alignment:
| Q |
13 |
caaaccttgtcttatattttctcttagcagcagcatttaacgcagcttgccccgtcttgtattgtccagaaccatctcttgccaccacaagattgtactt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| || |||||||||||| |||||||||||||||||||||| |
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|
| T |
1624319 |
caaaccttgtcttatattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgaccagaaccatcttttgccaccacaagattgtactt |
1624418 |
T |
|
| Q |
113 |
tactggaccctttgactgccaaagattcctttcatgcacagaaaaccaatttggaaatgacccttcttctggttctgcaagtgacggatccaaannnnnn |
212 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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|
| T |
1624419 |
tactggaccctttgactgcaaaagcttcctttcatgcacagaaaaccaatttggaaatgacccttcttctgtttctgcaagtgacggatccagaaatttt |
1624518 |
T |
|
| Q |
213 |
nattagtatgactatatatattcatataaaaagttcataagcgatagtgttatgacatcaatattatcatatgaatcatctgaaaagctggggtttacaa |
312 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| | | ||| |||| | |||||| |
|
|
| T |
1624519 |
gattagtatgactatatata---------aaagtacataagccatagtgttatgacatcaatattatcatatgaattaaatttaaatctggagattacaa |
1624609 |
T |
|
| Q |
313 |
aattttaacannnnnnnnacgaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgt |
412 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
1624610 |
aattttaacattttttttaagaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctct--gtgtcttct |
1624707 |
T |
|
| Q |
413 |
tattttaaaattcatttttatcttcccattttcaaccctatcatatttatattactctatgtatttgacaaaataaacattccataatttatctttcatt |
512 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
1624708 |
tattttaaaattcatttttatatacccatttttaaccctatcatatttatattactctatgtatgtcacaaaataaacattcaataatttatctttcatt |
1624807 |
T |
|
| Q |
513 |
taattcttcctaaataaagttattgaataactttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgtta |
597 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
1624808 |
taattcttcctaaataaagttattgaataattttttagcagtacaatactt-aattttaaatagaaaaaaataaaatcattgtta |
1624891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 10819982 - 10819711
Alignment:
| Q |
16 |
accttgtcttatattttctcttagcagcagcatttaacgcagcttgccccgtcttgtattgtccagaaccatctcttgccaccacaagattgtactttac |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| ||||||||||||||||| |||| | |
|
|
| T |
10819982 |
accttgtcttgtattttctcttagcagcagcatttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaagattgaacttcat |
10819883 |
T |
|
| Q |
116 |
tggaccctttgactgccaaagattcctttcatgcacagaaaaccaatttggaaatgacccttc------ttctggttctgcaagtgacggatccaaannn |
209 |
Q |
| |
|
|||| ||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
10819882 |
tggagacttagactgcaaaagcttcctttcatgcacagaaaaccaatttggaagtgacccttcttctatttctgtttctgcaa-tgacggatccagaaat |
10819784 |
T |
|
| Q |
210 |
nnnnattagtatgactatatatattcatataaaaagttcataagcgatagtgttatgacatcaatattatcat |
282 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10819783 |
ttagattagtatgactatatatatttatataaaaagtacataagcgatagtgttatgacatcaatattatcat |
10819711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 333 - 447
Target Start/End: Complemental strand, 10819635 - 10819521
Alignment:
| Q |
333 |
gaaaaaattaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcattttta |
432 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
10819635 |
gaaaaaattaaaactttatatacctaaaaaattgaagaaacttcatcatctacaaattataattgttctttgtgtcttcatattttaaaattctttttta |
10819536 |
T |
|
| Q |
433 |
tcttcccattttcaa |
447 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
10819535 |
gcttcccgttttcaa |
10819521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 340 - 434
Target Start/End: Original strand, 1602996 - 1603086
Alignment:
| Q |
340 |
ttaaaacattatatacctaaaatattgaagatacttgaacatctacaaattataattgctctttgtgtcttgttattttaaaattcatttttatc |
434 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| | ||| |||||||||||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
1602996 |
ttaaaacattatatacctaaaaaattgaagatacttcatcatatacaaattataattgc----tgtgtcttcatattttaaaattattttttatc |
1603086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 537 - 599
Target Start/End: Complemental strand, 10819227 - 10819166
Alignment:
| Q |
537 |
gaataactttttagcagtacaatacttaaattttaaatagaaaaatataaaatcattgttagt |
599 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
10819227 |
gaataattttttagcactacaatacttac-ttttaaatagaaaaaaataaaatcattgttagt |
10819166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 1631340 - 1631376
Alignment:
| Q |
563 |
taaattttaaatagaaaaatataaaatcattgttagt |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1631340 |
taaattttaaatagaaaaatataaaatcattgttagt |
1631376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 7e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 18785345 - 18785528
Alignment:
| Q |
13 |
caaaccttgtcttatattttctcttagcagcagcatttaacgcagcttgccccgtcttgtattgtccagaaccatctcttgccaccacaagattgtactt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
18785345 |
caaaccttgtcttatattttctcttagcagcagcatttagagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccacaatattgtactt |
18785444 |
T |
|
| Q |
113 |
tactggaccctttgactgccaaagattcctttcatgcacagaaaaccaatttggaaatgacccttcttctggttctgcaagtga |
196 |
Q |
| |
|
||||||| ||| |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18785445 |
tactggagacttagactgcaaaagcttcctttcatgcatagaaaaccaatttggaaatgacccttcttctgtttctgcaagtga |
18785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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