View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14656_low_4 (Length: 581)
Name: NF14656_low_4
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 465; Significance: 0; HSPs: 21)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 38 - 562
Target Start/End: Original strand, 8412200 - 8412724
Alignment:
| Q |
38 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8412200 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8412299 |
T |
|
| Q |
138 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8412300 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8412399 |
T |
|
| Q |
238 |
cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412400 |
cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg |
8412499 |
T |
|
| Q |
338 |
tgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgtta |
437 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412500 |
tgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgtta |
8412599 |
T |
|
| Q |
438 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgctttt |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8412600 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgctttt |
8412699 |
T |
|
| Q |
538 |
gttgttgatcttgtaatatttgtgt |
562 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8412700 |
gttgttgatcttgtaatatttgtgt |
8412724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 38 - 562
Target Start/End: Original strand, 8434298 - 8434822
Alignment:
| Q |
38 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8434298 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8434397 |
T |
|
| Q |
138 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8434398 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8434497 |
T |
|
| Q |
238 |
cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434498 |
cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtgg |
8434597 |
T |
|
| Q |
338 |
tgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgtta |
437 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434598 |
tgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgtta |
8434697 |
T |
|
| Q |
438 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgctttt |
537 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8434698 |
cgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtagaatgctttt |
8434797 |
T |
|
| Q |
538 |
gttgttgatcttgtaatatttgtgt |
562 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
8434798 |
gttgttgatcttgtaatatttgtgt |
8434822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 36 - 518
Target Start/End: Original strand, 8406078 - 8406560
Alignment:
| Q |
36 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
135 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8406078 |
gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt |
8406177 |
T |
|
| Q |
136 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg |
235 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
8406178 |
ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg |
8406277 |
T |
|
| Q |
236 |
ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406278 |
ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt |
8406377 |
T |
|
| Q |
336 |
ggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgt |
435 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406378 |
ggtgcaccttccccgtttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgt |
8406477 |
T |
|
| Q |
436 |
tacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406478 |
tacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta |
8406560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 36 - 518
Target Start/End: Complemental strand, 8395494 - 8395012
Alignment:
| Q |
36 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
135 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8395494 |
gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt |
8395395 |
T |
|
| Q |
136 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg |
235 |
Q |
| |
|
|||||||| | || ||||||||||| |||||||||||| ||| |||||||||| |||| ||||||||||| |||||||| ||||| ||||| ||||| |
|
|
| T |
8395394 |
ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg |
8395295 |
T |
|
| Q |
236 |
ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395294 |
ttcctctgtgagttgagagggttggattttgttcatgataatcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt |
8395195 |
T |
|
| Q |
336 |
ggtgcaccttccccgcttgtgacagctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgt |
435 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8395194 |
ggtgcaccttccccgtttgtgacagctgcaactccagacatggttgtagcagtgagagtaatcatttttattgagtttaatagaagattattccagttgt |
8395095 |
T |
|
| Q |
436 |
tacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395094 |
tacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcatta |
8395012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 277 - 562
Target Start/End: Complemental strand, 8395010 - 8394725
Alignment:
| Q |
277 |
gcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagctgcaacaccagacat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8395010 |
gcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgtttgtgacagctgcaacaccagacat |
8394911 |
T |
|
| Q |
377 |
ggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtct |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394910 |
ggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtct |
8394811 |
T |
|
| Q |
477 |
gatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8394810 |
gatacagcttccaagactgcatagagttgaactgtagcattagaatttgtagaatgcttttgttgttgatcttgtaatatttgtgt |
8394725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 163 - 573
Target Start/End: Original strand, 8431353 - 8431758
Alignment:
| Q |
163 |
taggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat |
262 |
Q |
| |
|
|||||||||||| |||||||||||||| || || |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8431353 |
taggatttccaagagcaattgtagtttgaatttgcctttgaagttacttgaacaatcttgtggcattcctttgttcttctgtgagttgagagggttggat |
8431452 |
T |
|
| Q |
263 |
tttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagtggtgcaccttccccgcttgtgacagct |
362 |
Q |
| |
|
|||||||||||||||||| ||||| |||| || || || | |||||||| || ||||||| ||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
8431453 |
tttgttcatgataagcaacaatccgttggctgccgaaaacaggagagcagaagatagtttcagagccaaaagtggtgcaacttccccacttgtgacagct |
8431552 |
T |
|
| Q |
363 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
462 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8431553 |
gcaacaccagacatagtcttagcagtgagagtaatcatgtttattgagttcaaaagaagattattccagttgttac---gttcgccaatgttgtgatgca |
8431649 |
T |
|
| Q |
463 |
tttctattctgtctgatacagcttccaagactgcatagagttgaactgtagcattagaaattgtacaatgcttttgttgttgatcttgtaatatttgtgt |
562 |
Q |
| |
|
||||||||||||||||||||||||| || |||| |||||||||| ||| || |||||| ||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
8431650 |
tttctattctgtctgatacagcttctaaaactg--tagagttgaattgtggctttagaatttgtagaatgcttttgttgttgatcttgtaatatttctgt |
8431747 |
T |
|
| Q |
563 |
tttgatgatgt |
573 |
Q |
| |
|
|||| |||||| |
|
|
| T |
8431748 |
tttgttgatgt |
8431758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 38 - 313
Target Start/End: Complemental strand, 8375806 - 8375531
Alignment:
| Q |
38 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||| ||||||||||||||| |
|
|
| T |
8375806 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc |
8375707 |
T |
|
| Q |
138 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8375706 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8375607 |
T |
|
| Q |
238 |
cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga |
313 |
Q |
| |
|
|||| | | |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
8375606 |
cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga |
8375531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 38 - 313
Target Start/End: Original strand, 8439297 - 8439572
Alignment:
| Q |
38 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc |
137 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||||||| |
|
|
| T |
8439297 |
aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc |
8439396 |
T |
|
| Q |
138 |
attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
8439397 |
attgcatctttgacatcttcctcggtaggatttcctatagcaattttagtttggatttgactttgaagttgcttgaacaatcttgtagcatttctttgtt |
8439496 |
T |
|
| Q |
238 |
cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga |
313 |
Q |
| |
|
|||| | | |||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
8439497 |
cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga |
8439572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 36 - 499
Target Start/End: Original strand, 8417413 - 8417882
Alignment:
| Q |
36 |
gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||||||| | |||||| ||| | |||||||| |||| |
|
|
| T |
8417413 |
gaaggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatcatgtgccaaaacttttt |
8417512 |
T |
|
| Q |
136 |
ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg |
235 |
Q |
| |
|
| || || |||||||||||||| | |||| |||||||| ||||||| | |||| ||| ||||||||||||||||||||||| ||||| | || | ||| |
|
|
| T |
8417513 |
caatagcttctttgacatcttctttagtagaatttccaagagcaatttttgtttggatttgactttgaagttgcttgaacaatcttgtagtgtttcattg |
8417612 |
T |
|
| Q |
236 |
ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagaggacagtttcatagccataagt |
335 |
Q |
| |
|
||||| | | |||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||||||||||| || | |||| ||||| |||| |
|
|
| T |
8417613 |
ctcctcggccaattgagaaggttggattttgttcatgataagcaacaatccggtggctgcagaaaacaaaagagcagaagataacttcaaagccaaaagt |
8417712 |
T |
|
| Q |
336 |
ggtgcaccttccccgcttgtg---ac---agctgcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattcc |
429 |
Q |
| |
|
| || | || | | ||| || ||| |||| ||||||||||||||||||||||||||||||||| || || || || || |||||| | |||| |
|
|
| T |
8417713 |
gatgaatctgagcaagtagtgggaacagtagcagcaagaccagacatggttgtagcagtgagagtaatcatgttgatggaattcaagagaagagtgttcc |
8417812 |
T |
|
| Q |
430 |
agttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagcttccaagactgcata |
499 |
Q |
| |
|
| ||||||||| |||| | |||||||||||||||||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
8417813 |
aattgttacgtagttcacaaatgttgtgatgcatttcaattctgtcagaaacaacttccaagactgcata |
8417882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 363 - 499
Target Start/End: Complemental strand, 8375475 - 8375339
Alignment:
| Q |
363 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
462 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
8375475 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgttacgctgttcgccaatgttttgatgca |
8375376 |
T |
|
| Q |
463 |
tttctattctgtctgatacagcttccaagactgcata |
499 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8375375 |
tttcaactctatcagaaactgcttccaagattgcata |
8375339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 363 - 499
Target Start/End: Original strand, 8439628 - 8439764
Alignment:
| Q |
363 |
gcaacaccagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgca |
462 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || ||||| || |||||| | ||||| ||| |||| |||||||||||||| ||||||| |
|
|
| T |
8439628 |
gcaacaccagacatggttgtagcagtaagagtaatcatgttgatggagttcaagagaagagtgttccaattgctacgctgttcgccaatgttttgatgca |
8439727 |
T |
|
| Q |
463 |
tttctattctgtctgatacagcttccaagactgcata |
499 |
Q |
| |
|
|||| | ||| || || || |||||||||| |||||| |
|
|
| T |
8439728 |
tttcaactctatcagaaactgcttccaagattgcata |
8439764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 506
Target Start/End: Original strand, 8368812 - 8368931
Alignment:
| Q |
387 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
486 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8368812 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8368911 |
T |
|
| Q |
487 |
ccaagactgcatagagttga |
506 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8368912 |
caagaattgcatagagttga |
8368931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 506
Target Start/End: Complemental strand, 8400598 - 8400479
Alignment:
| Q |
387 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
486 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8400598 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8400499 |
T |
|
| Q |
487 |
ccaagactgcatagagttga |
506 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8400498 |
caagaattgcatagagttga |
8400479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 506
Target Start/End: Complemental strand, 8422175 - 8422056
Alignment:
| Q |
387 |
gtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctattctgtctgatacagctt |
486 |
Q |
| |
|
|||||||| ||||| || || |||||||||||||| ||||||| || | ||||||||||||||||| |||||||||||||||||||| ||||||| || |
|
|
| T |
8422175 |
gtgagagtgatcatgttgatggagtttaatagaagggtattccaattatcgcgttgttcgccaatgttttgatgcatttctattctgtcggatacagatt |
8422076 |
T |
|
| Q |
487 |
ccaagactgcatagagttga |
506 |
Q |
| |
|
| | | ||||||||||||| |
|
|
| T |
8422075 |
caagaattgcatagagttga |
8422056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 210 - 277
Target Start/End: Original strand, 41119234 - 41119301
Alignment:
| Q |
210 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataag |
277 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41119234 |
ttgaacattcttgtagcattcctttgttcctctgtgagttgagagggttggggtttgttcatgataag |
41119301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 8404329 - 8404444
Alignment:
| Q |
228 |
ttcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcagag--gacagtttcat |
325 |
Q |
| |
|
||||||||||| |||| ||||| || ||||||||||||||||| | ||| |||| ||||||||| ||||| ||||| | ||||||| || ||||||| |
|
|
| T |
8404329 |
ttcctttgttcttctgcaagttgtgaaggttggattttgttcatcacaagtaatattccagtggcggcagaaaataacatagcagagaagatagtttcaa |
8404428 |
T |
|
| Q |
326 |
agccataagtggtgca |
341 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
8404429 |
agccagaaggggtgca |
8404444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 8368638 - 8368741
Alignment:
| Q |
210 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagag |
309 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | ||||| || |||||||||||||||||||||| || | ||||| | ||| ||||||||||| | |
|
|
| T |
8368638 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtg |
8368737 |
T |
|
| Q |
310 |
caga |
313 |
Q |
| |
|
|||| |
|
|
| T |
8368738 |
caga |
8368741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 8400772 - 8400706
Alignment:
| Q |
210 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa |
276 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | ||||| || |||||||||||||||||||||| |
|
|
| T |
8400772 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
8400706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 504
Target Start/End: Original strand, 8404470 - 8404604
Alignment:
| Q |
370 |
cagacatggttgtagcagtgagagtaatcatatttattgagtttaatagaagattattccagttgttacgttgttcgccaatgttgtgatgcatttctat |
469 |
Q |
| |
|
||||||| |||| ||| ||||| || ||||| || || |||||||||| ||| | ||||| |||| |||||||| || | ||| | ||||||||| || |
|
|
| T |
8404470 |
cagacattgttgaagctgtgagtgttatcatgttgatggagtttaataaaagcgtgttccaattgtcacgttgttgtcctaagtttttatgcatttcaat |
8404569 |
T |
|
| Q |
470 |
tctgtctgatacagcttccaagactgcatagagtt |
504 |
Q |
| |
|
||||||||||||||| ||| | | ||||||||||| |
|
|
| T |
8404570 |
tctgtctgatacagcctccgaaattgcatagagtt |
8404604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 276
Target Start/End: Complemental strand, 8422349 - 8422283
Alignment:
| Q |
210 |
ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa |
276 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||| | ||||| || |||||||||||||||||||||| |
|
|
| T |
8422349 |
ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa |
8422283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 8404183 - 8404240
Alignment:
| Q |
88 |
ctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttccattgcatc |
145 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||| |
|
|
| T |
8404183 |
ctcctaataaaggaagtggataggctttatcaagagccaaaaccttctcaattgcatc |
8404240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 39 - 139
Target Start/End: Original strand, 55331017 - 55331117
Alignment:
| Q |
39 |
ggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcca |
138 |
Q |
| |
|
||||||||| |||||| | | |||||||||| ||||||||||||| | |||||||| ||||||||||| ||||||||||| |||||||| || |||| |
|
|
| T |
55331017 |
ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca |
55331116 |
T |
|
| Q |
139 |
t |
139 |
Q |
| |
|
| |
|
|
| T |
55331117 |
t |
55331117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 55336451 - 55336540
Alignment:
| Q |
38 |
aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaa |
127 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| |
|
|
| T |
55336451 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaa |
55336540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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