View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14656_low_5 (Length: 566)
Name: NF14656_low_5
Description: NF14656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14656_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 102 - 381
Target Start/End: Complemental strand, 4303169 - 4302890
Alignment:
| Q |
102 |
acattgatcaaataaggatatatactgcttttataatggatagtttacaaattcaatcgtatgatcttacatgattatgaaagtttgatgttgggtagca |
201 |
Q |
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| T |
4303169 |
acatcgatcaaataaggatatatactgcttttataatggatagtttacaaattcaattgtatgatcttacatgattatgaaagtttgatgttgggtagca |
4303070 |
T |
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| Q |
202 |
aacaacaattaactgtcagttgggggtgggagagcaatttttaaagtttaaagagcaatatttctgcatagtagactggacatagtcatggcccaaagtt |
301 |
Q |
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| T |
4303069 |
aacaacaattaactgtcagttgggggtgggagagcaatgtttgaagtttaaagagcaatatttctgcatagtagactggacatagtcatggcccaaagtt |
4302970 |
T |
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| Q |
302 |
atgaatctaaaagcccaaattgagtttcatgacttcgtttatctaaactattctaaagaaaagtaatcacaaatcactaa |
381 |
Q |
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| T |
4302969 |
atgaatctaaaagcccaaattgagtttcatgacttcgtttatctaaactattctaaagaaaagtaatcacaaatcactaa |
4302890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 378 - 550
Target Start/End: Complemental strand, 4302112 - 4301945
Alignment:
| Q |
378 |
ctaagttgctaatgctagggccaaaaggctggtgggcacgtgcgtgcaccctttcctttgcctatttttggccacaaattacaatccaattatccaacca |
477 |
Q |
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| T |
4302112 |
ctaagttgctaatgctagggccaaaaggctggtgggcacgtgc----accctttcctttgcctatttttggccacaaatta-aatccaattatccaacca |
4302018 |
T |
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| Q |
478 |
atattagtagacttataaactaagatcatgacatgtgaaactatgttaattaagagcatttgaagtcacaagc |
550 |
Q |
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| T |
4302017 |
atattagtagaattataaactaagatcatgacatgtgaaactatattaattaagagcatttgaagtcacaagc |
4301945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 4303398 - 4303305
Alignment:
| Q |
20 |
agcaggataagaactagctaggagtctgtccaaacgaatttttgggccagaaagcaaagttccatgaatatttttcccttgaacattgatcaaa |
113 |
Q |
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| T |
4303398 |
agcaggataagaactagctaggagtctgtccaaacgaatttttgggccagaaagcaaagttccaagaatatttgtcccttgaacattgttcaaa |
4303305 |
T |
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