View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14657_high_1 (Length: 338)
Name: NF14657_high_1
Description: NF14657
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14657_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 45480129 - 45480444
Alignment:
| Q |
15 |
aatttcatgctcctggctatttgttcccatactaatatttatcttcacttacnnnnnnnnnnnngataactacttttcagtgcctaataccttataaaat |
114 |
Q |
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| T |
45480129 |
aatttcatgctcctggctatttgttcccatactaatatttatcttcacttacaaaaacaaaaa-gataactacttttcagtgcctaataccttataaaat |
45480227 |
T |
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| Q |
115 |
cttgggtagaagacagaaagatgacccacnnnnnnnggtctaattttttacaagccctgttgaaatcagaagtgggttttggaagattgacacaatcatg |
214 |
Q |
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| T |
45480228 |
cttgggtagaagacagaaagatgacccacaaaaaaaggtctaattttttacaagccctgttgaaatcagaagtgggttttggaagattgacacaatcatg |
45480327 |
T |
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| Q |
215 |
tgaggatcacaaaattgaacaaaacaaatacacataaacaagaaacagaaggaagatgttaaacacaagacatgtcctaatcaaagcttacttcagaaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45480328 |
tgaggatcacaaaattgaacaaaacaaatacacataaacaagaaacagaaggaagatgttaaacacaagacatgtcctaatcaaagcttacttcagaaac |
45480427 |
T |
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| Q |
315 |
tatttaattgatgatgt |
331 |
Q |
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||||||||||| ||||| |
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| T |
45480428 |
tatttaattgaagatgt |
45480444 |
T |
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