View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14658_high_5 (Length: 247)
Name: NF14658_high_5
Description: NF14658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14658_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45928437 - 45928199
Alignment:
| Q |
1 |
tcataatctttggacatctcgagcctatattagtattttatttatttattttgcctttcnnnnnnnnnngttttaattttggtttgttaacttgagttgg |
100 |
Q |
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| T |
45928437 |
tcataatctttggacatctcgagcctatattagtattttatttatttattttgccttt-aaaaaaaaaagttttaattttggtttgttaacttgagttgg |
45928339 |
T |
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| Q |
101 |
ttgacaattattacatttcaactttgtatatagctcagttttgataatgaatttcccaattttcttttactcttcc--------tcgacatccagttcaa |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
45928338 |
ttgacaattattacatttcaactttgtatatagctcagttttgataatgaatttcccaattttcttttactcttcctctgtatttcgacattcagttcaa |
45928239 |
T |
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| Q |
193 |
catatttaacgaacattcttagctttgtggtgatctaaat |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45928238 |
catatttaacgaacattcttagctttgtggtgatctaaat |
45928199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 99
Target Start/End: Complemental strand, 48302727 - 48302698
Alignment:
| Q |
70 |
gttttaattttggtttgttaacttgagttg |
99 |
Q |
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| T |
48302727 |
gttttaattttggtttgttaacttgagttg |
48302698 |
T |
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