View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14658_low_1 (Length: 553)
Name: NF14658_low_1
Description: NF14658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14658_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 5 - 537
Target Start/End: Complemental strand, 44160451 - 44159920
Alignment:
| Q |
5 |
atggacatcatcattgacctcaaaatttaagttgttatgctaaaagattgtagtgaataatatatttgacctgatttaagttcnnnnnnnggtttgcatt |
104 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
44160451 |
atggaaatcatcattgacctcaaaatttaagttgttatgctaaaagattgtagtgaataatatatttgacctgatttaagttctttttt-ggcatgcatt |
44160353 |
T |
|
| Q |
105 |
gttcggaaaagaccataaaggagcatcgaggtttctcaatagtcccctaactcctaagatgcgtaaaaggattattttctgcattaaaaaagaattgttt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44160352 |
gttcggaaaagaccataaaggagcatcgaggtttctcaatagtcccctaactcctaagatgcgtaaaaggattattttctgcattaaaaaaggattgttt |
44160253 |
T |
|
| Q |
205 |
taattatttatttattcaacgaattagcttcatgcacatgcaaacactcggtacgacaaaatcattcattcaattaaagaaaacctaattaactttatca |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44160252 |
taattatttatttattcaacgaattagcttcatgcacatgcatacactcggtacgacaaaatcattcattcaattaaagaaaacctaattaactttatca |
44160153 |
T |
|
| Q |
305 |
aacttgcacaaaattatttaattttattgaagtttcaaattattatcgatttgaatcaatcttttgaaaacaaatatatcatctgtatgcattatgtatt |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
44160152 |
aacttgcacaaaattatttaattttattgaagtttcaaattattatcgatttgaatcaatcttttgaaaacaaatatatcatctgcatgtattatgtatt |
44160053 |
T |
|
| Q |
405 |
cagcagtgctatatacattgaagccgattatcccaaatgtatcgcgaaacagtaaccaaccaatataaaagcaggcttcacgaaaatcatgggagagtca |
504 |
Q |
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| T |
44160052 |
cagcagtgctatatacattgaagccgattatcccaaatgtatcgcgaaacagtaaccaaccaatataaaagcaggcttcacgaaaatcatggaagagtca |
44159953 |
T |
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| Q |
505 |
atatagaaaatggaagtcaataaaaatggcttg |
537 |
Q |
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| T |
44159952 |
atatagaaaatggaagtcaataaaaacggcttg |
44159920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 537
Target Start/End: Complemental strand, 30467754 - 30467689
Alignment:
| Q |
471 |
aaaagcaggcttcacgaaaatcatgggagagtcaatatagaaaatggaagtcaataaaaatggcttg |
537 |
Q |
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|||| ||||||||||| |||||| ||| |||||||||| |||||||||||||| ||||| |||||| |
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| T |
30467754 |
aaaaacaggcttcacggaaatcacggg-gagtcaatatgcaaaatggaagtcaacaaaaacggcttg |
30467689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 530
Target Start/End: Original strand, 37630305 - 37630431
Alignment:
| Q |
404 |
tcagcagtgctatatacattgaagccgattatcccaaatgtatcgcgaaacagtaaccaaccaatataaaagcaggcttcacgaaaatcatgggagagtc |
503 |
Q |
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|||| ||||||||||||| ||||||||||||||| ||||||| | | ||| || |||||| |||||||||||||||| | ||||||||| |||| |
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| T |
37630305 |
tcagtagtgctatatacaacgaagccgattatcccgaatgtataacaagacaacaattcaccaatgaaaaagcaggcttcacggatatcatgggaaagtc |
37630404 |
T |
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| Q |
504 |
aatatagaaaatggaagtcaataaaaa |
530 |
Q |
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||||| |||||||||||||| ||||| |
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| T |
37630405 |
aatatgaaaaatggaagtcaacaaaaa |
37630431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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