View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14658_low_5 (Length: 312)
Name: NF14658_low_5
Description: NF14658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14658_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 29568575 - 29568298
Alignment:
| Q |
13 |
aatatgatagtttatgaattaaattaatggtttattcaattactacattacatataacatttgaataaaattgtggataacttcctgcatagattacaat |
112 |
Q |
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| T |
29568575 |
aatatgatagtttatgaattaaattaatggtttattcgattactacattacatataacatttgaataaaattgtggataacttcctgcatagattacaat |
29568476 |
T |
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| Q |
113 |
gtataaggtgatctgtatatgcatattgatttatttattttacatactgatccccaaatggtcataatacacatgaacttaggtnnnnnnnnnnnnncag |
212 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
29568475 |
gtataacgtgatctgtatatgcatattgatttatttattttacatactgatccccaaatggtcataattcacatgaacttaggt--aaaaaagaaaacag |
29568378 |
T |
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| Q |
213 |
tcatacacatgagctatgaaaccctttagcataggaaatcaagaagcaaaagcctagttgtcatcttgcttcaactggat |
292 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29568377 |
tcatacacatgaactatgaaaccctttagcataggaaatcaagaagcaaaagcctagttgtcatcttgcttcaactggat |
29568298 |
T |
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