View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14658_low_9 (Length: 241)
Name: NF14658_low_9
Description: NF14658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14658_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7098286 - 7098062
Alignment:
| Q |
1 |
cgtaaaaattgagaaaaaataatctgtttgatggaatagttttacttctttactttataatgacaagccgaaatccacgcattatttacttcttgttctt |
100 |
Q |
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| T |
7098286 |
cgtaaaaattgagaaaaaataatctgtttgatggaatagttttacttctttgctttataatgacaagccgaaatccacgcattatttacttcttgttctt |
7098187 |
T |
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| Q |
101 |
gatttacaaatttgcttaaatcacatgtcatgagataatgcatttcaaattacatctttctttgaaatggtatgagtgcaagctgcataaacttaacatc |
200 |
Q |
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| T |
7098186 |
gatttacaaatttgcttaaatcacatgtgatgagataatgcatttcaaagtacatctttctttgaagtggtatgagtgcaagctgcataaacttaacatc |
7098087 |
T |
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| Q |
201 |
agttgacattgtttaccttgtagct |
225 |
Q |
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| T |
7098086 |
agttgacattgtttaccttgtagct |
7098062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 6772663 - 6772854
Alignment:
| Q |
22 |
atctgtttgatggaatagttttacttctttactttataatgacaagccgaaatccacgcattatttacttcttgttcttgatttacaaatttgcttaaat |
121 |
Q |
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| T |
6772663 |
atctatttgatagaatagttttacttctttgctttataatgacaatccgaaatacatgcattctttacttcttg-------attacaaa-ttgtttaaaa |
6772754 |
T |
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| Q |
122 |
cacatgtcatgagataatgcatttcaaattacatctttctttgaaatggtatgagtgcaagctgcataaacttaacatcagttgacattgtttaccttgt |
221 |
Q |
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| T |
6772755 |
cacaagttatgagagaatgcatttcaaattacatccttc-ctgaagtggtatgagcacaagctttataaacttaacatca---gatattgcttaccttgt |
6772850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 225
Target Start/End: Original strand, 6737803 - 6737961
Alignment:
| Q |
59 |
aatgacaagccgaaatccacgcattatttacttcttgttcttgatttacaaatttgcttaaatcacatgtcatgagataatgcatttcaaattacatctt |
158 |
Q |
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||||||||||||| ||||| ||||| ||||||||| | ||||| ||||| | |||||||||| ||||||||| ||||||||||||||||||| | |
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| T |
6737803 |
aatgacaagccgagatccatgcattctttacttctag------atttataaatt-gtttaaatcacaagtcatgagagaatgcatttcaaattacattct |
6737895 |
T |
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| Q |
159 |
tctttgaaatggtatgagtgcaagctgcataaacttaacatcagttgacattgtttaccttgtagct |
225 |
Q |
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| T |
6737896 |
tc-ctgaagtggtatgagtacacgctttataaacttaacatcaagtgatattgtttaccttgtagct |
6737961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 6723333 - 6723393
Alignment:
| Q |
116 |
ttaaatcacatgtcatgagataatgcatttcaaattacatctttctttgaaatggtatgagt |
177 |
Q |
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| T |
6723333 |
ttaaatcacaagtcatgagagaatgcatttcaaatgacatccttc-ctgaagtggtatgagt |
6723393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 6748067 - 6748103
Alignment:
| Q |
116 |
ttaaatcacatgtcatgagataatgcatttcaaatta |
152 |
Q |
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| T |
6748067 |
ttaaatcacaagtcatgagagaatgcatttcaaatta |
6748103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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