View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14659_high_1 (Length: 237)
Name: NF14659_high_1
Description: NF14659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14659_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 51038293 - 51038085
Alignment:
| Q |
12 |
tgagaagaagatatattatgttgaagggatgaatatgatagtgaagggggatgaagaacataatgaatttccttaatttcttatcataatcttcgttttc |
111 |
Q |
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| T |
51038293 |
tgagatgaagatatattatgttgaagggatgaatatgatagtgaagggggatgaagaacataatgaatttccttaatttcttatcataatcttcgttttc |
51038194 |
T |
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| Q |
112 |
tcagaaatacaactatgattgaagatacgtgaaacaattttgcagaaggaagtgaatatgacaatgtaggagatgaagaaaatcgattttgcagaaacaa |
211 |
Q |
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| T |
51038193 |
tcagaaacacaactgtgattgaagatacgtgaaacaattttgcagaaggaagtgaatatga-agtgtaggagatgaagaaaatcgattttgcagaaacaa |
51038095 |
T |
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| Q |
212 |
agatatgtga |
221 |
Q |
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|||||||||| |
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| T |
51038094 |
agatatgtga |
51038085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 43 - 221
Target Start/End: Complemental strand, 1963922 - 1963744
Alignment:
| Q |
43 |
aatatgatagtgaagggggatgaagaacataatgaatttccttaatttcttatcataatcttcgttttctcagaaatacaactatgattgaagatacgtg |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
1963922 |
aatatgatagtgaagggggatgaagaacataatgaatttccttagtttcttatcatcatcttcgttttctcagaaacacaactgtgattgaagatacgtg |
1963823 |
T |
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| Q |
143 |
aaacaattttgcagaaggaagtgaatatgacaatgtaggagatgaagaaaatcgattttgcagaaacaaagatatgtga |
221 |
Q |
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| T |
1963822 |
aaacgattttgcagaaggaagtgaatatgacagtgtaggagatgaagaaaatcgattttgcagaaacaaagatatgtga |
1963744 |
T |
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