View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14659_low_1 (Length: 495)
Name: NF14659_low_1
Description: NF14659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14659_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 203 - 450
Target Start/End: Original strand, 42824522 - 42824768
Alignment:
| Q |
203 |
tcaccattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtacca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42824522 |
tcaccattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtacca |
42824621 |
T |
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| Q |
303 |
tcctccagttaattggttctggtcaccaacacaacacacaaacagttccaaaatcaacaccagaaaccaacatgcatgagattctagatccaatttctga |
402 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42824622 |
tcctccaattaattggttctggtcaccaacacaacacacaaacagttccaaaatcaacaccagaaacc-acatgcatgagattctagatccaatttctga |
42824720 |
T |
|
| Q |
403 |
aataaaccccaaaagcagaatagagaaaagctgcgcccttgatggaag |
450 |
Q |
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|||||||||||| |||||||||||||||||||||||||| || ||||| |
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| T |
42824721 |
aataaaccccaagagcagaatagagaaaagctgcgccctagagggaag |
42824768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 203 - 441
Target Start/End: Complemental strand, 8345119 - 8344882
Alignment:
| Q |
203 |
tcaccattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtacca |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8345119 |
tcaccattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtacca |
8345020 |
T |
|
| Q |
303 |
tcctccagttaattggttctggtcaccaacacaacacacaaacagttccaaaatcaacaccagaaaccaacatgcatgagattctagatccaatttctga |
402 |
Q |
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| T |
8345019 |
tcctccaattaattggttctggtcaccaacacaacacacaaacagttccaaaatcaacaccagaaacc-acatgcatgagattctagatccaatttctga |
8344921 |
T |
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| Q |
403 |
aataaaccccaaaagcagaatagagaaaagctgcgccct |
441 |
Q |
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| T |
8344920 |
aataaaccccaagagcagaatagagaaaagctgcgccct |
8344882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 8345245 - 8345163
Alignment:
| Q |
79 |
ggccacatacctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttcctg |
161 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8345245 |
ggccacatacctgacattctatattttcaccaatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctg |
8345163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 42824369 - 42824451
Alignment:
| Q |
79 |
ggccacatacctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttcctg |
161 |
Q |
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| T |
42824369 |
ggccacatacctgacattctatattttcaccaatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctg |
42824451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 161
Target Start/End: Original strand, 42824450 - 42824478
Alignment:
| Q |
133 |
tggacgaaatccctacatcaattttcctg |
161 |
Q |
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| T |
42824450 |
tggacgaaatccctacatcaattttcctg |
42824478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 203 - 358
Target Start/End: Complemental strand, 49019017 - 49018862
Alignment:
| Q |
203 |
tcaccattgataatcaagaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtacca |
302 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
49019017 |
tcaccattgataatcaaaaaaatggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtacca |
49018918 |
T |
|
| Q |
303 |
tcctccagttaattggttctggtcaccaacacaacacacaaacagttccaaaatca |
358 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
49018917 |
tcctccaattaattggttctgatcaccaacacaacacacaaacagttccaaaatca |
49018862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 49019143 - 49019061
Alignment:
| Q |
79 |
ggccacatacctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttcctg |
161 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
49019143 |
ggccacatacctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
49019061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
87 |
acctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttc |
158 |
Q |
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||||| |||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
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| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 39073745 - 39073819
Alignment:
| Q |
87 |
acctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttcctg |
161 |
Q |
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|||||||||||||||||| || |||||||||||||| |||| ||||| ||| |||||| ||||||||||||||| |
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| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctg |
39073819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 36588096 - 36588170
Alignment:
| Q |
87 |
acctgacattctctattttcaccaatcaattcaccagaagttgaattggacgaaatccctacatcaattttcctg |
161 |
Q |
| |
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|||||||| ||||||| | | |||||||||||||||||||| ||||| ||||||||||| | ||||||||||||| |
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| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctg |
36588170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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