View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1465_high_1 (Length: 405)

Name: NF1465_high_1
Description: NF1465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1465_high_1
NF1465_high_1
[»] chr3 (3 HSPs)
chr3 (194-388)||(11663391-11663585)
chr3 (12-194)||(11663890-11664062)
chr3 (28-103)||(11581592-11581667)
[»] chr7 (3 HSPs)
chr7 (312-360)||(43793508-43793556)
chr7 (34-101)||(36514273-36514340)
chr7 (61-103)||(42177110-42177152)
[»] chr8 (1 HSPs)
chr8 (24-103)||(30559841-30559920)
[»] chr4 (6 HSPs)
chr4 (12-103)||(31961309-31961400)
chr4 (12-100)||(17900631-17900719)
chr4 (229-289)||(41427676-41427736)
chr4 (319-357)||(42037638-42037676)
chr4 (28-101)||(51550308-51550380)
chr4 (31-91)||(25257656-25257716)
[»] chr2 (3 HSPs)
chr2 (12-103)||(44437764-44437855)
chr2 (116-175)||(7293685-7293744)
chr2 (58-103)||(26784429-26784474)
[»] chr1 (2 HSPs)
chr1 (58-103)||(3818945-3818990)
chr1 (57-102)||(39422015-39422060)
[»] chr5 (1 HSPs)
chr5 (60-100)||(28186866-28186906)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 194 - 388
Target Start/End: Complemental strand, 11663585 - 11663391
Alignment:
Q  194 cgacatcctcatatttttatgcttactttatgaccatgttggttctttatcgttcaacactctgtctagtacaacatcgttgatctgactgttgtcggat 293  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  11663585 cgacatcctcatatttttatgcttactttatgtccatgttggttctttaccgttcaacactctgtctagtacaacatcgttgatttgaccgttgtcggat 11663486  T
Q  294 aatatttccattgtaacctaagtggtactttcacatcacataacacacctgaggtactcctccattttatactccccgtttggatttgatagttt 388  Q
    || ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  11663485 aagatttccactgtaacctaactggtaatttcacatcacataacacacctgaggtactcctccattttatacttcccgtttggattcgatagttt 11663391  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 11664062 - 11663890
Alignment:
Q  12 atgaattaaaccacgtcataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttatagnnnnnnnn 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| |||||||||||||||||||            
T  11664062 atgaattaaaccacgtcataatgttctataaaaaatcatgtatt---tcaactcatttatctctaaatcttttttgatagcttctcttatagtttat--- 11663969  T
Q  112 nnnnctaggtttatccctacctctagtgatcaaatttccctccatctgatctacactcttaactatggaattcacatgtcttc 194  Q
        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11663968 ----ctaggtttatccccacctctagtgatcaaatttccctccatctgatctacactcttaactatggaattcacatgtcttc 11663890  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 28 - 103
Target Start/End: Complemental strand, 11581667 - 11581592
Alignment:
Q  28 cataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    ||||||||||||||||||||||||| ||  |||||||||||||||| || ||||||||| |||| |||||||||||    
T  11581667 cataatgttctataaaaaatcatgtctttcttcaactcatttatctatagatctttcttaatagtttctcttatag 11581592  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 312 - 360
Target Start/End: Original strand, 43793508 - 43793556
Alignment:
Q  312 taagtggtactttcacatcacataacacacctgaggtactcctccattt 360  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||||||    
T  43793508 taagcggtactttcacatcacataatacacctgaggaactcctccattt 43793556  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 36514273 - 36514340
Alignment:
Q  34 gttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttat 101  Q
    ||||||| ||||| ||||| ||  | ||| ||||||||||||| ||| ||||||||||||||||||||    
T  36514273 gttctatcaaaaaccatgtctttctccaattcatttatctctagatccttcttgatagcttctcttat 36514340  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 103
Target Start/End: Original strand, 42177110 - 42177152
Alignment:
Q  61 aactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    |||||||||||||||| ||||||||| |||| |||||||||||    
T  42177110 aactcatttatctctagatctttcttaatagattctcttatag 42177152  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 30559920 - 30559841
Alignment:
Q  24 acgtcataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    ||||||||||||||||| | ||| ||| |||   | ||||||||| ||||||||||||||| |||||| |||||||||||    
T  30559920 acgtcataatgttctatcataaaccatatatggatccaactcattaatctctaaatctttcctgatagtttctcttatag 30559841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 31961309 - 31961400
Alignment:
Q  12 atgaattaaaccacgtcataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    |||||| |||| |||||||| |||||||| || || ||||| ||  | ||||||||||||||||| ||||||| | |||| |||||||||||    
T  31961309 atgaatcaaacgacgtcatagtgttctatcaacaaccatgtctttctccaactcatttatctctagatctttcctaatagtttctcttatag 31961400  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 17900719 - 17900631
Alignment:
Q  12 atgaattaaaccacgtcataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctctta 100  Q
    |||||| |||| ||| |||| || ||||| ||||| ||||| ||  | ||||||||||||||||| ||||||| |||||| ||||||||    
T  17900719 atgaatcaaacaacgccatagtgctctattaaaaaccatgtctttctacaactcatttatctctatatctttcctgatagtttctctta 17900631  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 289
Target Start/End: Complemental strand, 41427736 - 41427676
Alignment:
Q  229 atgttggttctttatcgttcaacactctgtctagtacaacatcgttgatctgactgttgtc 289  Q
    |||||||||||| ||||| ||||||||||| |  ||||||||||||| |||||| ||||||    
T  41427736 atgttggttcttaatcgtccaacactctgtttcatacaacatcgttgttctgacagttgtc 41427676  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Complemental strand, 42037676 - 42037638
Alignment:
Q  319 tactttcacatcacataacacacctgaggtactcctcca 357  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  42037676 tactttcacatcacataaaacacctgaggcactcctcca 42037638  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Original strand, 51550308 - 51550380
Alignment:
Q  28 cataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttat 101  Q
    ||||||||||||| |||| |||||| || | |||||||||||||||||| ||| ||| | ||||| ||||||||    
T  51550308 cataatgttctatcaaaagtcatgtctt-tctcaactcatttatctctagatccttcctaatagcatctcttat 51550380  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 25257656 - 25257716
Alignment:
Q  31 aatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatag 91  Q
    |||||||||| ||||| ||||| ||  ||||||||||| ||||||| |||||| |||||||    
T  25257656 aatgttctatcaaaaaacatgtctttcttcaactcattgatctctagatcttttttgatag 25257716  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 44437764 - 44437855
Alignment:
Q  12 atgaattaaaccacgtcataatgttctataaaaaatcatgtattatttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    ||||||||||| ||| |||| |||||||| ||||| ||||| ||  | ||||||||||||||||| ||| ||||| |||| ||||| |||||    
T  44437764 atgaattaaacaacgccatagtgttctatcaaaaaccatgtttttctccaactcatttatctctagatccttcttaatagtttctcatatag 44437855  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 7293744 - 7293685
Alignment:
Q  116 ctaggtttatccctacctctagtgatcaaatttccctccatctgatctacactcttaact 175  Q
    ||||||||| |||||||||||||||||  | ||| ||||||||||||||| ||| |||||    
T  7293744 ctaggtttacccctacctctagtgatccgacttctctccatctgatctactctcctaact 7293685  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 26784429 - 26784474
Alignment:
Q  58 ttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    ||||||||||| ||||||| ||||||||| |||| |||||||||||    
T  26784429 ttcaactcattaatctctatatctttcttaatagtttctcttatag 26784474  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 3818945 - 3818990
Alignment:
Q  58 ttcaactcatttatctctaaatctttcttgatagcttctcttatag 103  Q
    ||||||||||| ||||||||||||||||| |||| |||||||||||    
T  3818945 ttcaactcattaatctctaaatctttcttaatagtttctcttatag 3818990  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 39422015 - 39422060
Alignment:
Q  57 tttcaactcatttatctctaaatctttcttgatagcttctcttata 102  Q
    |||||||||||||||||||| |||||||||  ||| ||||||||||    
T  39422015 tttcaactcatttatctctagatctttcttattagtttctcttata 39422060  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Original strand, 28186866 - 28186906
Alignment:
Q  60 caactcatttatctctaaatctttcttgatagcttctctta 100  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  28186866 caactcattaatctctaaatctttcttaatagtttctctta 28186906  T

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