View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1465_low_3 (Length: 259)
Name: NF1465_low_3
Description: NF1465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1465_low_3 |
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| [»] scaffold0286 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0286 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 13122 - 13380
Alignment:
| Q |
1 |
ttttggttttgtcccctgagttcctgtagggcacagacttgtatgtagcttttccctttgtattctgttctattccagagagtgttttttcccgttcagg |
100 |
Q |
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| T |
13122 |
ttttggttttgtcccccgagttcctgtagggcacagacttgtatgtagcttttctctttgtattctgttctattccggagagtgttttttcccgttcagg |
13221 |
T |
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| Q |
101 |
tttgtttatatctatttacctttagaaaaaacaattcaacctgcatctgataatgcatggatatttgttgggtgttaacccctcccattttcagggaaga |
200 |
Q |
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| T |
13222 |
tttgtatatatctatttacctttagaaaaaacaattcaacctgcatctgataatgcatggatatttgttgggtgttaacccctcccattttcagggaaga |
13321 |
T |
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| Q |
201 |
ggctcttgtaattcaaagttcgattgtgtggtaagtataatctggccgagaattcttcc |
259 |
Q |
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| T |
13322 |
ggctcttgtaattcaatgtttggtcatgtggtaagtataatctggccaagaattcttcc |
13380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 2170140 - 2169882
Alignment:
| Q |
1 |
ttttggttttgtcccctgagttcctgtagggcacagacttgtatgtagcttttccctttgtattctgttctattccagagagtgttttttcccgttcagg |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2170140 |
ttttggttttgtcccccgagttcctgtagggcacagacttgtatgtagcttttctctttgtattctgttctattccggagagtgttttttcccgttcagg |
2170041 |
T |
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| Q |
101 |
tttgtttatatctatttacctttagaaaaaacaattcaacctgcatctgataatgcatggatatttgttgggtgttaacccctcccattttcagggaaga |
200 |
Q |
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| T |
2170040 |
tttgtatatatctatttacctttagaaaaaacaattcaacctgcatctgataatgcatggatatttgttgggtgttaacccctcccattttcagggaaga |
2169941 |
T |
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| Q |
201 |
ggctcttgtaattcaaagttcgattgtgtggtaagtataatctggccgagaattcttcc |
259 |
Q |
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| T |
2169940 |
ggctcttgtaattcaatgtttggtcatgtggtaagtataatctggccaagaattcttcc |
2169882 |
T |
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