View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14660_low_1 (Length: 591)

Name: NF14660_low_1
Description: NF14660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14660_low_1
NF14660_low_1
[»] chr6 (6 HSPs)
chr6 (256-582)||(8813602-8813926)
chr6 (256-582)||(7078750-7079073)
chr6 (29-253)||(8814051-8814293)
chr6 (29-252)||(7078383-7078624)
chr6 (48-103)||(7078719-7078774)
chr6 (48-103)||(8813902-8813957)
[»] chr3 (3 HSPs)
chr3 (40-104)||(2470828-2470892)
chr3 (37-97)||(25158250-25158311)
chr3 (40-85)||(9194355-9194400)
[»] chr8 (1 HSPs)
chr8 (45-75)||(24191000-24191030)
[»] chr1 (1 HSPs)
chr1 (39-76)||(31847318-31847355)
[»] chr7 (1 HSPs)
chr7 (39-83)||(5241047-5241091)
[»] chr4 (1 HSPs)
chr4 (39-75)||(46823233-46823269)
[»] chr2 (1 HSPs)
chr2 (37-73)||(36208229-36208265)


Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 256 - 582
Target Start/End: Complemental strand, 8813926 - 8813602
Alignment:
Q  256 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttt-ggacagtctagaatagttcccttccaaatcatcatttttgtggtg 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8813926 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatctttttggacagtctagaatagttcccttccaaatcatcatttttgtggtg 8813827  T
Q  355 catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagagta 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  8813826 catgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag-- 8813729  T
Q  455 ctatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttaga 554  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8813728 -tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcgaaactagttcataaattgagggttatatccaccttaga 8813630  T
Q  555 gataggacaaatacaagtataatctacc 582  Q
    ||||||||||||||||||| ||| ||||    
T  8813629 gataggacaaatacaagtacaatttacc 8813602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 256 - 582
Target Start/End: Original strand, 7078750 - 7079073
Alignment:
Q  256 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcatttttgtggtgc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7078750 atgagtaattttgattgggagaagaacaaattttcatgttgaaaacaatcttttggacagtctagaatagttcccttccaaatcatcaattttgtggtgc 7078849  T
Q  356 atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagagtac 455  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  7078850 atgagtgacccctttgtaaagttttcaagtgcgtagtgcaaagaaaccaacttcttattttgactatgctatatagcaacatctcttgggcaaagag--- 7078946  T
Q  456 tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtagaaactagttcataaattgagggttatatccaccttagag 555  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  7078947 tatattttcccactatctttgtaataattttgtaattaacattacaaggagaaatgggtcaaaactagttcataaattgagggttatatccaccttagag 7079046  T
Q  556 ataggacaaatacaagtataatctacc 582  Q
    |||||||||||||||||| ||| ||||    
T  7079047 ataggacaaatacaagtacaatttacc 7079073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 29 - 253
Target Start/End: Complemental strand, 8814293 - 8814051
Alignment:
Q  29 aaaaaagaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaa------------------caataaaa 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |  |||||    
T  8814293 aaaatagaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaatgtgagttaactcacgttcggtaaaa 8814194  T
Q  111 ccaacatgaattaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtgattttgc 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8814193 ccaacatgagttaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtggttttgc 8814094  T
Q  211 tccattaaaaatcaacattagttgcgggatttaagttcgtggg 253  Q
    |||||||||||||||||||||  | ||||||||||||||||||    
T  8814093 tccattaaaaatcaacattagcagtgggatttaagttcgtggg 8814051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 29 - 252
Target Start/End: Original strand, 7078383 - 7078624
Alignment:
Q  29 aaaaaagaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaac-------aa-----------taaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||           |||||    
T  7078383 aaaaaagaaggaaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaatgtgagttaactcacgtttggtaaaa 7078482  T
Q  111 ccaacatgaattaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtgattttgc 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7078483 ccaacatgagttaactcacgttcgataataatcaacattagttataggggaatttttgtgttaatgttacaagtataatcgaattaaagtgtggttttgc 7078582  T
Q  211 tccattaaaaatcaacattagttgcgggatttaagttcgtgg 252  Q
    |||||||||||||||||||||  | |||||||||||| ||||    
T  7078583 tccattaaaaatcaacattagcagtgggatttaagtttgtgg 7078624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 7078774 - 7078719
Alignment:
Q  48 tcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaac 103  Q
    ||||||||||||||||||| |||||||| || ||||| | ||||||||||| ||||    
T  7078774 tcttctcccaatcaaaattactcattcccacctaaaccatcaaaaataacttcaac 7078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 8813902 - 8813957
Alignment:
Q  48 tcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaac 103  Q
    ||||||||||||||||||| |||||||| || ||||| | ||||||||||| ||||    
T  8813902 tcttctcccaatcaaaattactcattcccacctaaaccatcaaaaataacttcaac 8813957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 2470892 - 2470828
Alignment:
Q  40 aaaattgctcttctcccaatcaaaattgctcattcctacataaactaccaaaaataactccaaca 104  Q
    |||||||||||||||| ||||||||||||||||||| |||||| ||||| |||||| | ||||||    
T  2470892 aaaattgctcttctccaaatcaaaattgctcattcccacataagctaccgaaaatacccccaaca 2470828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 97
Target Start/End: Complemental strand, 25158311 - 25158250
Alignment:
Q  37 aggaaaattgctcttctcccaatcaaaattgctcattccta-cataaactaccaaaaataac 97  Q
    |||||||||| |||||||||||||||| | ||||||||| | || |||||||||||||||||    
T  25158311 aggaaaattgttcttctcccaatcaaattagctcattcccaccagaaactaccaaaaataac 25158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 9194400 - 9194355
Alignment:
Q  40 aaaattgctcttctcccaatcaaaattgctcattcctacataaact 85  Q
    |||||||||||||||||| ||||||||||||| ||| |||| ||||    
T  9194400 aaaattgctcttctcccattcaaaattgctcactcccacatgaact 9194355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 45 - 75
Target Start/End: Complemental strand, 24191030 - 24191000
Alignment:
Q  45 tgctcttctcccaatcaaaattgctcattcc 75  Q
    |||||||||||||||||||||||||||||||    
T  24191030 tgctcttctcccaatcaaaattgctcattcc 24191000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 31847318 - 31847355
Alignment:
Q  39 gaaaattgctcttctcccaatcaaaattgctcattcct 76  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  31847318 gaaaattgctcttctccctttcaaaattgctcattcct 31847355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 5241047 - 5241091
Alignment:
Q  39 gaaaattgctcttctcccaatcaaaattgctcattcctacataaa 83  Q
    |||||||||||||||| ||| |||||||| ||||||| |||||||    
T  5241047 gaaaattgctcttctcacaaacaaaattgttcattcccacataaa 5241091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 46823233 - 46823269
Alignment:
Q  39 gaaaattgctcttctcccaatcaaaattgctcattcc 75  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  46823233 gaaaattgctcttctcccattcaaaattcctcattcc 46823269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 36208229 - 36208265
Alignment:
Q  37 aggaaaattgctcttctcccaatcaaaattgctcatt 73  Q
    |||||||||||||||||||||  ||||||||||||||    
T  36208229 aggaaaattgctcttctcccatgcaaaattgctcatt 36208265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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