View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14660_low_3 (Length: 335)
Name: NF14660_low_3
Description: NF14660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14660_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 4205992 - 4205701
Alignment:
| Q |
1 |
agttctctgtgttattgaggacttttagatcacaaaatgtttgcttttccagctcaactggtaacatgaacatcatgaaattgagaatatttacaaatca |
100 |
Q |
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| T |
4205992 |
agttctctgtgttattgaggacttttagatcacaaaatgtttgcttttccagctcaactggtaaaatgaacatcatgaaattgagaatatttacaaatca |
4205893 |
T |
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| Q |
101 |
agaatgcaaaataattacggaaaacaaagaaaataatttcacatttataaatgaaatattctaatgatttcttgtgtcaataccaaaacgaggtccaaaa |
200 |
Q |
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| T |
4205892 |
agaatgcaaaataattacggaaaacaaagaaaataatttcaaatttataaatgaaatattctaatgatttcttgtgtcaataccaaaacgaggtccaaaa |
4205793 |
T |
|
| Q |
201 |
tcaagagaagtaaaattatagttccttcttataaaggaatcatcatcattatcaatagaacaaacccgttatgaaggcaccctataaataat |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
4205792 |
tcaagagaagtaaaattatagttccttcttataaaggaatcatcatcattatcaatagaacaaacccgttatgaaggcaccttttaaataat |
4205701 |
T |
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