View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14660_low_5 (Length: 223)

Name: NF14660_low_5
Description: NF14660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14660_low_5
NF14660_low_5
[»] chr4 (3 HSPs)
chr4 (17-86)||(29883898-29883967)
chr4 (151-200)||(29884032-29884081)
chr4 (18-86)||(29879891-29879959)


Alignment Details
Target: chr4 (Bit Score: 66; Significance: 2e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 29883898 - 29883967
Alignment:
Q  17 attcttgtgctttgttgagggtgcttcctgataaccgaattgattttaattcagagtcttacaagagttg 86  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29883898 attcttgtgctttgtcgagggtgcttcctgataaccgaattgattttaattcagagtcttacaagagttg 29883967  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 29884032 - 29884081
Alignment:
Q  151 ctttactatacatgtcatatatttttaagtatagatcttatttggttaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29884032 ctttactatacatgtcatatatttttaagtatagatcttatttggttaat 29884081  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 29879959 - 29879891
Alignment:
Q  18 ttcttgtgctttgttgagggtgcttcctgataaccgaattgattttaattcagagtcttacaagagttg 86  Q
    |||| ||| ||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  29879959 ttctcgtgttttgttgagtgtgctcccttataaccgagttgattttaattcagagtcttacaagagttg 29879891  T

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