View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14661_high_1 (Length: 615)

Name: NF14661_high_1
Description: NF14661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14661_high_1
NF14661_high_1
[»] chr8 (5 HSPs)
chr8 (16-441)||(31877955-31878380)
chr8 (16-441)||(31555089-31555515)
chr8 (26-424)||(31558191-31558588)
chr8 (304-351)||(13568429-13568476)
chr8 (296-406)||(4042194-4042304)
[»] chr5 (17 HSPs)
chr5 (412-609)||(10215708-10215905)
chr5 (298-515)||(10212170-10212387)
chr5 (297-505)||(10105888-10106097)
chr5 (298-482)||(10102805-10102991)
chr5 (218-441)||(10109223-10109445)
chr5 (297-448)||(13856016-13856167)
chr5 (292-449)||(10209685-10209842)
chr5 (300-441)||(9660199-9660340)
chr5 (297-397)||(12109354-12109454)
chr5 (303-360)||(9674763-9674820)
chr5 (300-349)||(12104608-12104657)
chr5 (300-378)||(10215906-10215984)
chr5 (298-352)||(37278735-37278789)
chr5 (296-356)||(3467667-3467727)
chr5 (535-586)||(10104247-10104298)
chr5 (535-586)||(10107727-10107778)
chr5 (368-448)||(9674059-9674140)
[»] chr1 (12 HSPs)
chr1 (297-401)||(10542392-10542496)
chr1 (298-432)||(45151994-45152128)
chr1 (297-425)||(42202365-42202493)
chr1 (297-425)||(42211233-42211361)
chr1 (297-425)||(2176292-2176420)
chr1 (296-432)||(45316380-45316516)
chr1 (297-402)||(42409597-42409702)
chr1 (293-361)||(43014366-43014434)
chr1 (298-408)||(51795018-51795128)
chr1 (300-360)||(42217273-42217333)
chr1 (297-356)||(42417641-42417700)
chr1 (19-110)||(10542168-10542260)
[»] chr7 (7 HSPs)
chr7 (294-441)||(3649472-3649619)
chr7 (294-441)||(3647023-3647170)
chr7 (306-441)||(3657601-3657736)
chr7 (302-355)||(3641211-3641264)
chr7 (369-408)||(3656176-3656215)
chr7 (314-361)||(19523283-19523330)
chr7 (307-335)||(22315926-22315954)
[»] chr3 (3 HSPs)
chr3 (300-407)||(46446217-46446324)
chr3 (292-436)||(21884021-21884165)
chr3 (292-349)||(35717255-35717312)
[»] chr4 (6 HSPs)
chr4 (297-399)||(25698808-25698910)
chr4 (297-441)||(17889422-17889566)
chr4 (293-361)||(49588194-49588262)
chr4 (305-393)||(46362507-46362595)
chr4 (297-364)||(36790835-36790902)
chr4 (312-351)||(20918686-20918725)
[»] chr6 (2 HSPs)
chr6 (297-361)||(33891592-33891656)
chr6 (298-352)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (293-361)||(5900521-5900589)
chr2 (306-400)||(26568347-26568441)
chr2 (309-361)||(43633443-43633495)
chr2 (294-352)||(2341338-2341396)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 31877955 - 31878380
Alignment:
Q  16 caccttggtctgtttctgtggaaggaaagcttcaaaaaatgtttaatcttttagctttcagatattgaagtaatataaaatgatgttaaacattcatgta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31877955 caccttggtctgtttctgtggaaggaaagcttcaaaaaatgtttaatattttagctttcagatattgaagtaatataaaatgatgttaaacattcatgta 31878054  T
Q  116 ggtgtgttgatgagttagagtgaataggggaagattgtgacaagttctgcattgacaagtagaaagaaaggaaaggggaaaagtgagtgggtgtctagct 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31878055 ggtgtgttgatgagttagagtgaataggggaagattgtgacaagttctgcattggcaagtagaaagaaaggaaaggggaaaagtgagtgggtgtctagct 31878154  T
Q  216 aaaaagtcctacatcggctaatacataaacccaaccaagcagcttgtatataaaatgaaagcacttctttattgaaaaaatcacggagccgtgtgatgat 315  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  31878155 aaaaagtcccacatcggctaatacataaacccaaccaagcagcttgtatataaaaggaaagcacttctttgttgaaaaaatcacggagccgtgtgatgat 31878254  T
Q  316 cacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||   |||    
T  31878255 cacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcttctttattgagg 31878354  T
Q  416 gctctgcaattttagttcaatatttt 441  Q
    |||||||||| |||||| ||| ||||    
T  31878355 gctctgcaatattagtttaatttttt 31878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 31555515 - 31555089
Alignment:
Q  16 caccttggtctgtttctgtggaaggaaagcttcaaaaaatgtttaa-tcttttagctttcagatattgaagtaatataaaatgatgttaaacattc-atg 113  Q
    |||||||| |||||||||||||||||||||||||| |||||||||| |||| |||||||||||||| |||| ||| || ||||||||||||||||| |||    
T  31555515 caccttggcctgtttctgtggaaggaaagcttcaacaaatgtttaaatcttctagctttcagatatggaagaaatctagaatgatgttaaacattccatg 31555416  T
Q  114 taggtgtgttgatgagttagagtgaataggggaagattgtgacaagttctgcattgacaagtagaaagaaaggaaaggggaaaagtgagtgggtgtctag 213  Q
    || ||||||||||||||| ||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||||||||| |    
T  31555415 taagtgtgttgatgagtt-gagtgaataggggaagattctgacaagttctgctctgtcaagtagaaagaaaggaaaggggaaaagtgagtgggtgtctgg 31555317  T
Q  214 ctaaaaagtcctacatcggctaatacataaacccaaccaagcagcttgtatataaaatgaaagcacttctttattgaaaaaatcacggagccgtgtgatg 313  Q
    |||||||| || |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  31555316 ctaaaaagccccacatcggctaatgcataaacccaaccaagctgcttgcatataaaatgaaagcacttcttcctctaaaaaatcacggagccgtgtgatg 31555217  T
Q  314 atcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacata 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||   |    
T  31555216 atcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcttctttattga 31555117  T
Q  414 gggctctgcaattttagttcaatatttt 441  Q
    |||||||||||| |||||| ||| ||||    
T  31555116 gggctctgcaatattagtttaatttttt 31555089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 26 - 424
Target Start/End: Complemental strand, 31558588 - 31558191
Alignment:
Q  26 tgtttctgtggaaggaaagcttcaaaaaatgtttaatcttttagctttcagatattgaagtaatataaaatgatgttaaacattc-atgtaggtgtgttg 124  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| |||| ||| || ||||||||||||||||| ||||||||||||||    
T  31558588 tgtttctgtggaaggaaagcttcaatgaatgtttaatcttctagctttcagatatggaagaaatctagaatgatgttaaacattccatgtaggtgtgttg 31558489  T
Q  125 atgagttagagtgaataggggaagattgtgacaagttctgcattgacaagtagaaagaaaggaaaggggaaaagtgagtgggtgtctagctaaaaagtcc 224  Q
    ||||||| || ||||||||||||||||||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31558488 atgagtt-gattgaataggggaagattgtgacaagttctgctctgtcaattagaaagaaaggaaaggggaaaagtgagtgggtgtcttgctaaaaagtcc 31558390  T
Q  225 tacatcggctaatacataaacccaaccaagcagcttgtatataaaatgaaagcacttctttattgaaaaaatcacggagccgtgtgatgatcacatagcg 324  Q
     |||||||| ||| ||||||||||||||||| ||||| ||||||| |||||||||||||   ||   | || || |||||||||||||||||||||||||    
T  31558389 cacatcggccaatgcataaacccaaccaagctgcttgcatataaactgaaagcacttctacctt-ttataagcatggagccgtgtgatgatcacatagcg 31558291  T
Q  325 aactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaa 424  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||| |||||||| ||| ||   ||||||||||||    
T  31558290 aactattctttcgccttttactaaagaataccgtgtgaacgtcacaattagcggcatacgttagtttttagaagagtcctctatattgagggctctgcaa 31558191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 13568476 - 13568429
Alignment:
Q  304 ccgtgtgatgatcacatagcgaactattctttcgccttttactaaaga 351  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13568476 ccgtgtgataatcacatagcgaactattctttcgccttttactaaaga 13568429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 406
Target Start/End: Complemental strand, 4042304 - 4042194
Alignment:
Q  296 tcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgg 395  Q
    ||||| ||||||||||||| | || ||| |||||||||||||||||| |||||||||||| ||| |  | | || |||| ||||||| || | |||||||    
T  4042304 tcacgcagccgtgtgatgagctcaaagcaaactattctttcgcctttgactaaagaatactgtgggctcgtcactattaacggcatatgccaatttttgg 4042205  T
Q  396 aagagtcttct 406  Q
    |||||||||||    
T  4042204 aagagtcttct 4042194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 4e-86; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 412 - 609
Target Start/End: Complemental strand, 10215905 - 10215708
Alignment:
Q  412 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtttttggtatgctacttgtttaagggagttctttaccaatt 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||  ||||||||||||||||| ||    
T  10215905 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggtaactatgtttctgatatgctacttgtgcaagggagttctttaccactt 10215806  T
Q  512 gtataatatgtttaagccgattaattagtcttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatat 609  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  10215805 gtataatatgtttaagctgattaattagtcttgagatgattgcataacttcatagacctatgttgacttgatttattgataataatgattagttatat 10215708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 298 - 515
Target Start/End: Complemental strand, 10212387 - 10212170
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||    
T  10212387 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaatactgtgtgagtgtcacaattagcggcatacgctagtttttggaa 10212288  T
Q  398 gagtcttctttacatagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtttttggtatgctacttgtttaaggga 497  Q
    ||||| || | ||  | ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  10212287 gagtcctcctcaccgaaggctctgcaattttagtacaatattttcttattcttgtttttttgtggttactatgttattggtatgctacttgtttaaggga 10212188  T
Q  498 gttctttaccaattgtat 515  Q
    ||||||||||| ||||||    
T  10212187 gttctttaccacttgtat 10212170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 297 - 505
Target Start/End: Original strand, 10105888 - 10106097
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||    
T  10105888 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcataattagcggcatacgctagtttttgga 10105987  T
Q  397 agagtcttctttacatagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgt-ttttggtatgctacttgtttaagg 495  Q
    |||||| ||||||   |||||||||||| ||||||||||| ||||  ||||| | |||| |||| ||| ||||||  | |||||||||| ||||||||||    
T  10105988 agagtcctctttattgagggctctgcaaatttagttcaatttttttgtattctttttttaatgtagttgctatgtaatatggtatgctatttgtttaagg 10106087  T
Q  496 gagttcttta 505  Q
     |||| ||||    
T  10106088 tagttattta 10106097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 298 - 482
Target Start/End: Original strand, 10102805 - 10102991
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 397  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||    
T  10102805 acggagctgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacactagtttttggaa 10102904  T
Q  398 gagtcttctttacatagggctctgcaattttagttcaatattttcctattc--ctatttttatgtggttactatgtttttggtatgc 482  Q
    ||||| |||| |   |||||||||||| ||||||||||||||||  |||||   ||||||||||||||| ||||||| |||||||||    
T  10102905 gagtcctcttcattgagggctctgcaaatttagttcaatatttttgtattcttttatttttatgtggttgctatgttattggtatgc 10102991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 218 - 441
Target Start/End: Original strand, 10109223 - 10109445
Alignment:
Q  218 aaagtcctacatcggctaatacataaacccaaccaagcagcttgtatataaaatgaaagcacttctttattgaaaaaatcacggagccgtgtgatgatca 317  Q
    ||||||| |||||| | ||| |||||||  ||| | |||||||| |||||||| || || || |||   ||| ||| |||||||||||||||||||||||    
T  10109223 aaagtcccacatcgcccaattcataaactaaactatgcagcttgcatataaaaagatagaacctctcc-ttgtaaagatcacggagccgtgtgatgatca 10109321  T
Q  318 catagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||   |||||    
T  10109322 catagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcctctttatggagggc 10109421  T
Q  418 tctgcaattttagttcaatatttt 441  Q
    ||||||||||||||| ||| ||||    
T  10109422 tctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 297 - 448
Target Start/End: Original strand, 13856016 - 13856167
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||||||||||     
T  13856016 cacggagccgagtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttgctattagcggcatacactagtttttggg 13856115  T
Q  397 agagtcttctttacatagggctctgcaattttagttcaatattttcctattc 448  Q
    |||||| |||| ||| |||||| |||||||||||||||||||||||||||||    
T  13856116 agagtcctcttcacagagggctttgcaattttagttcaatattttcctattc 13856167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 292 - 449
Target Start/End: Complemental strand, 10209842 - 10209685
Alignment:
Q  292 aaaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttt 391  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||||    
T  10209842 aaaatcacggagccgtgtgatgaacacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatgagtggcatacgttagttt 10209743  T
Q  392 ttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattcc 449  Q
    ||||||||||  ||||||   ||||||||||||||||||||||||  ||| |||||||    
T  10209742 ttggaagagttctctttatggagggctctgcaattttagttcaatgattttctattcc 10209685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 300 - 441
Target Start/End: Complemental strand, 9660340 - 9660199
Alignment:
Q  300 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaaga 399  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| | | ||||||||| ||||| || |||||||||||||    
T  9660340 ggagccttgtgatgatcacatagcgaactattattttgccttttactaaagaatactgtgtgaacgtcacaattagcagcatatgccagtttttggaaga 9660241  T
Q  400 gtcttctttacatagggctctgcaattttagttcaatatttt 441  Q
    ||| | || |   || ||||||||||||||||||||||||||    
T  9660240 gtcctattcatggagtgctctgcaattttagttcaatatttt 9660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 12109454 - 12109354
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||    
T  12109454 cacggagccgcctgatgatcacatagcaaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatttgtggcatacgctagtttttgga 12109355  T
Q  397 a 397  Q
    |    
T  12109354 a 12109354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 303 - 360
Target Start/End: Complemental strand, 9674820 - 9674763
Alignment:
Q  303 gccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 360  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  9674820 gccgtgtgatgatcacaaagtgaactattctttcgccttttactaaagaataccgtgt 9674763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 12104657 - 12104608
Alignment:
Q  300 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaa 349  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12104657 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaa 12104608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 300 - 378
Target Start/End: Complemental strand, 10215984 - 10215906
Alignment:
Q  300 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcgg 378  Q
    ||||| ||||| |||||||||||  ||||||||||| |||||||||||||||||||| ||||||  |||||||||||||    
T  10215984 ggagctgtgtgttgatcacatagtaaactattcttttgccttttactaaagaataccttgtgagtgttacaattagcgg 10215906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 37278789 - 37278735
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaa 352  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  37278789 acggagccgtgtgatgagcacataacgaactattctttcgccttttactaaagaa 37278735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 3467727 - 3467667
Alignment:
Q  296 tcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaatacc 356  Q
    ||||| ||||||||||||| | || ||| ||||||||||||||||||||||||||||||||    
T  3467727 tcacgcagccgtgtgatgagctcaaagcaaactattctttcgccttttactaaagaatacc 3467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 10104247 - 10104298
Alignment:
Q  535 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 586  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10104247 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 10107727 - 10107778
Alignment:
Q  535 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 586  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10107727 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10107778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 448
Target Start/End: Complemental strand, 9674140 - 9674059
Alignment:
Q  368 acaattagcggcatacgctagtttttgg-aagagtcttctttacatagggctctgcaattttagttcaatattttcctattc 448  Q
    |||||| |||||||| |||||||||||| ||||||| |||| |   ||||||||||||| ||||| |||| |||||| ||||    
T  9674140 acaatttgcggcatatgctagtttttggaaagagtcatcttcattgagggctctgcaatattagtacaatgttttcccattc 9674059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 9e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 297 - 401
Target Start/End: Original strand, 10542392 - 10542496
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10542392 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttacaattagcggcatacgctagtttttgga 10542491  T
Q  397 agagt 401  Q
    |||||    
T  10542492 agagt 10542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 298 - 432
Target Start/End: Original strand, 45151994 - 45152128
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 397  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| ||||||||||||||||||||||||||    
T  45151994 acggagccgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttttggaa 45152093  T
Q  398 gagtcttctttacatagggctctgcaattttagtt 432  Q
    ||||| |||||||  ||||||||||||| ||||||    
T  45152094 gagtcctctttacggagggctctgcaatattagtt 45152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 42202493 - 42202365
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||    
T  42202493 cacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagtttttgga 42202394  T
Q  397 agagtcttctttacatagggctctgcaat 425  Q
    ||||||||||||    |||||||||||||    
T  42202393 agagtcttctttttggagggctctgcaat 42202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 42211361 - 42211233
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||||||||||    
T  42211361 cacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagtttttgga 42211262  T
Q  397 agagtcttctttacatagggctctgcaat 425  Q
    ||||||||||||    |||||||||||||    
T  42211261 agagtcttctttttggagggctctgcaat 42211233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 2176420 - 2176292
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||  | ||| |||||||||||||||||||||||||    
T  2176420 cacggagacgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttttgga 2176321  T
Q  397 agagtcttctttacatagggctctgcaat 425  Q
    |||||||| || ||  ||| |||||||||    
T  2176320 agagtctttttaacggaggactctgcaat 2176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 296 - 432
Target Start/End: Complemental strand, 45316516 - 45316380
Alignment:
Q  296 tcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgg 395  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | ||  ||| ||||||||| ||||||||||    
T  45316516 tcacggagccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcaacgtcacttttaacggcatacgttagtttttgg 45316417  T
Q  396 aagagtcttctttacatagggctctgcaattttagtt 432  Q
    ||||| | |||| |   ||||||||||||| ||||||    
T  45316416 aagagccctcttaattgagggctctgcaatattagtt 45316380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 297 - 402
Target Start/End: Original strand, 42409597 - 42409702
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||| || |||||| |||||||||||    
T  42409597 cacggagctgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttaacgacatacgttagtttttgga 42409696  T
Q  397 agagtc 402  Q
    ||||||    
T  42409697 agagtc 42409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 43014434 - 43014366
Alignment:
Q  293 aaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43014434 aaatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 43014366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 51795018 - 51795128
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaa 397  Q
    ||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||| | | | | ||| || |||||||| ||||||||||||||    
T  51795018 acggaaccgtgtgatgatgacatagcaaactattgtttcgccttttactaaagaatagcgtatcaacgtcacattttgcggcatatgctagtttttggaa 51795117  T
Q  398 gagtcttcttt 408  Q
    ||||| |||||    
T  51795118 gagtcatcttt 51795128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 42217333 - 42217273
Alignment:
Q  300 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgt 360  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  42217333 ggagccgtgtgatgacgacatagcgaactattctttcgccttttactaaagaatactgtgt 42217273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 356
Target Start/End: Original strand, 42417641 - 42417700
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaatacc 356  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  42417641 cacggagctgtgtgatgatgacatagcgaattattctttcgccttttactaaagaatacc 42417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 10542168 - 10542260
Alignment:
Q  19 cttggtctgtttctgtggaaggaaagcttcaaaaaatgtttaatcttttagctttcagata-ttgaagtaatataaaatgatgttaaacattc 110  Q
    |||||||| ||||| |||||| ||||||||||  ||||||||||||| || |||| ||||| |||||| ||| ||||||||| || |||||||    
T  10542168 cttggtctctttctttggaagcaaagcttcaaggaatgtttaatcttctaactttgagatatttgaagaaatctaaaatgattttgaacattc 10542260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 3649472 - 3649619
Alignment:
Q  294 aatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 393  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||    
T  3649472 aatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 3649571  T
Q  394 ggaagagtcttctttacatagggctctgcaattttagttcaatatttt 441  Q
    ||||| ||| |||| |   ||||||||||||| |||||||||| ||||    
T  3649572 ggaagggtcctcttaattgagggctctgcaatattagttcaatttttt 3649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 294 - 441
Target Start/End: Original strand, 3647023 - 3647170
Alignment:
Q  294 aatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 393  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| | || ||||||||||||| |||||||||    
T  3647023 aatcacggagccgtgtgatgatgacatagcaaactattctttcgccttttactaaagaataccgtgtcagcgtcactattagcggcatacactagttttt 3647122  T
Q  394 ggaagagtcttctttacatagggctctgcaattttagttcaatatttt 441  Q
    | ||| ||| ||||||   ||||||||||||| ||||| |||| ||||    
T  3647123 gaaagggtcctctttattgagggctctgcaatgttagtgcaatgtttt 3647170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 306 - 441
Target Start/End: Original strand, 3657601 - 3657736
Alignment:
Q  306 gtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttc 405  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||| ||||||||||||||  || ||    
T  3657601 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacaaatagcggcatacactagtttttggaaggatcatc 3657700  T
Q  406 tttacatagggctctgcaattttagttcaatatttt 441  Q
    ||||   ||| ||||||||| |||||||||| ||||    
T  3657701 tttatcgaggactctgcaatattagttcaatttttt 3657736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 3641211 - 3641264
Alignment:
Q  302 agccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaatac 355  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3641211 agccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatac 3641264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 408
Target Start/End: Original strand, 3656176 - 3656215
Alignment:
Q  369 caattagcggcatacgctagtttttggaagagtcttcttt 408  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  3656176 caattaggggcatacgctagtttttggaagagtcctcttt 3656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 19523330 - 19523283
Alignment:
Q  314 atcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||| ||||||  ||||||||||||||||||||||||| |||||||    
T  19523330 atcacagagcgaataattctttcgccttttactaaagaattccgtgtg 19523283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 307 - 335
Target Start/End: Original strand, 22315926 - 22315954
Alignment:
Q  307 tgtgatgatcacatagcgaactattcttt 335  Q
    |||||||||||||||||||||||||||||    
T  22315926 tgtgatgatcacatagcgaactattcttt 22315954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 300 - 407
Target Start/End: Original strand, 46446217 - 46446324
Alignment:
Q  300 ggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaaga 399  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||   |||||||||||||||||||||||    
T  46446217 ggagccttgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgttactatttttggcatacgctagtttttggaaga 46446316  T
Q  400 gtcttctt 407  Q
    ||||||||    
T  46446317 gtcttctt 46446324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 292 - 436
Target Start/End: Complemental strand, 21884165 - 21884021
Alignment:
Q  292 aaaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttt 391  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || | ||    ||||||||||| || |||    
T  21884165 aaaatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgttaattt 21884066  T
Q  392 ttggaagagtcttctttacatagggctctgcaattttagttcaat 436  Q
    ||| ||||||| | || ||  ||||||||||||| | ||||||||    
T  21884065 ttgaaagagtccttttcaccgagggctctgcaatataagttcaat 21884021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 35717312 - 35717255
Alignment:
Q  292 aaaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaa 349  Q
    ||||||| | ||||||||||||| |||||||| ||||||| ||||| |||||||||||    
T  35717312 aaaatcatgaagccgtgtgatgagcacatagcaaactattatttcgtcttttactaaa 35717255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 25698808 - 25698910
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||| ||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| | | |||||||||||||||||||||||||||    
T  25698808 cacggagctgtgtgatgatcacatagtggactattctttcgccttttattaaagaataccgtgtgagcgtcataattagcggcatacgctagtttttgga 25698907  T
Q  397 aga 399  Q
    |||    
T  25698908 aga 25698910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 297 - 441
Target Start/End: Original strand, 17889422 - 17889566
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttgga 396  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  | | || |  |||||||||||||| |||||| |    
T  17889422 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcacgtcactaaaagcggcatacgctaatttttgaa 17889521  T
Q  397 agagtcttctttacatagggctctgcaattttagttcaatatttt 441  Q
    |||||| || |||   |||| |||||||| |||||| ||||||||    
T  17889522 agagtcctccttaatgagggttctgcaatattagtttaatatttt 17889566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 361
Target Start/End: Complemental strand, 49588262 - 49588194
Alignment:
Q  293 aaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  49588262 aaatcacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 49588194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 46362595 - 46362507
Alignment:
Q  305 cgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagttttt 393  Q
    ||||| ||||| ||||||||||||||| |||||| ||||||||||||||||| ||| ||||| ||| ||||||| ||||| ||||||||    
T  46362595 cgtgtaatgatgacatagcgaactattatttcgctttttactaaagaataccatgtcagcatcacatttagcggtatacgttagttttt 46362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 364
Target Start/End: Original strand, 36790835 - 36790902
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagc 364  Q
    |||||||| | | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36790835 cacggagctgcgcgatgagcacaaagcgaactattctttcgccttttactaaagaataccgtgtgagc 36790902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 312 - 351
Target Start/End: Original strand, 20918686 - 20918725
Alignment:
Q  312 tgatcacatagcgaactattctttcgccttttactaaaga 351  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  20918686 tgatcacatagcaaactattctttcgccttttactaaaga 20918725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 297 - 361
Target Start/End: Original strand, 33891592 - 33891656
Alignment:
Q  297 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  33891592 cacggaaccgtgtgataagcacatagcgaactattctttcgccttttactaaagaataccgtgtg 33891656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 27868725 - 27868671
Alignment:
Q  298 acggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaa 352  Q
    |||||||||||| ||||||||||||| ||||||| ||||| |||||||| |||||    
T  27868725 acggagccgtgtaatgatcacatagcaaactattgtttcgtcttttacttaagaa 27868671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 5900521 - 5900589
Alignment:
Q  293 aaatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||    
T  5900521 aaatcacggaaccgtgtgataagcacaaagcgaactattctttcgccttttactaaagaataccgtgtg 5900589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 26568347 - 26568441
Alignment:
Q  306 gtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcattacaattagcggcatacgctagtttttggaagag 400  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| || | ||    |||||||||||||| |||||| |||||    
T  26568347 gtgtgatgagcacatagcgaactattcttttgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgctaatttttgaaagag 26568441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 43633495 - 43633443
Alignment:
Q  309 tgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtg 361  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||||||    
T  43633495 tgatgagcacaaagtgaactattctttcgccttttactaaagaataccgtgtg 43633443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 2341396 - 2341338
Alignment:
Q  294 aatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaa 352  Q
    |||| ||||||| |||  ||| |||| ||||||||||||||||||||||||| ||||||    
T  2341396 aatcccggagccatgtagtgagcacaaagcgaactattctttcgccttttacaaaagaa 2341338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University