View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14661_high_2 (Length: 379)

Name: NF14661_high_2
Description: NF14661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14661_high_2
NF14661_high_2
[»] chr1 (17 HSPs)
chr1 (19-364)||(46768219-46768587)
chr1 (217-348)||(34775136-34775266)
chr1 (177-343)||(32882583-32882756)
chr1 (217-315)||(10785180-10785278)
chr1 (212-361)||(11439694-11439840)
chr1 (215-325)||(32863255-32863365)
chr1 (224-317)||(6582968-6583061)
chr1 (173-326)||(16148988-16149149)
chr1 (257-348)||(27102488-27102576)
chr1 (214-272)||(16577521-16577579)
chr1 (214-323)||(31290732-31290839)
chr1 (286-364)||(9313011-9313088)
chr1 (213-319)||(52278547-52278648)
chr1 (286-363)||(4431008-4431084)
chr1 (222-324)||(46603632-46603732)
chr1 (295-343)||(42374526-42374573)
chr1 (284-323)||(49820486-49820526)
[»] chr5 (19 HSPs)
chr5 (178-364)||(26045634-26045827)
chr5 (220-343)||(30097600-30097722)
chr5 (227-357)||(26405226-26405354)
chr5 (233-355)||(13953928-13954049)
chr5 (220-316)||(7195019-7195114)
chr5 (215-355)||(14302124-14302262)
chr5 (214-364)||(10174942-10175089)
chr5 (214-356)||(33109881-33110017)
chr5 (215-364)||(8297734-8297880)
chr5 (212-356)||(7682813-7682955)
chr5 (257-364)||(25992307-25992411)
chr5 (220-299)||(21398054-21398133)
chr5 (229-367)||(5187219-5187355)
chr5 (219-325)||(4914208-4914315)
chr5 (237-307)||(7403669-7403737)
chr5 (293-342)||(31742504-31742552)
chr5 (257-324)||(37108104-37108170)
chr5 (281-343)||(24071953-24072014)
chr5 (286-364)||(33258560-33258637)
[»] chr8 (7 HSPs)
chr8 (173-363)||(17656408-17656605)
chr8 (214-354)||(10248246-10248386)
chr8 (215-342)||(8862314-8862441)
chr8 (173-363)||(12197747-12197943)
chr8 (173-363)||(12442175-12442371)
chr8 (219-316)||(2273769-2273860)
chr8 (214-298)||(43312375-43312458)
[»] chr2 (14 HSPs)
chr2 (215-364)||(7696224-7696371)
chr2 (173-364)||(37770324-37770509)
chr2 (214-343)||(4975006-4975134)
chr2 (214-343)||(4992914-4993042)
chr2 (263-364)||(13337561-13337660)
chr2 (217-324)||(41113450-41113554)
chr2 (214-364)||(34230464-34230610)
chr2 (216-277)||(12343081-12343142)
chr2 (217-324)||(10173289-10173396)
chr2 (227-364)||(29997220-29997355)
chr2 (267-364)||(41086475-41086570)
chr2 (279-343)||(22884806-22884869)
chr2 (279-364)||(4472269-4472353)
chr2 (216-272)||(27879913-27879970)
[»] chr4 (19 HSPs)
chr4 (215-356)||(49747790-49747930)
chr4 (220-364)||(38636905-38637047)
chr4 (220-356)||(41117647-41117781)
chr4 (221-364)||(16832691-16832831)
chr4 (221-305)||(53823151-53823232)
chr4 (218-319)||(19311081-19311181)
chr4 (173-325)||(39420745-39420904)
chr4 (221-282)||(25753442-25753503)
chr4 (214-298)||(52009101-52009184)
chr4 (284-364)||(28967206-28967285)
chr4 (292-362)||(48098645-48098714)
chr4 (239-324)||(2061542-2061627)
chr4 (214-287)||(22810907-22810980)
chr4 (214-271)||(49528333-49528390)
chr4 (306-363)||(52009178-52009234)
chr4 (291-363)||(42719494-42719565)
chr4 (214-313)||(19814939-19815041)
chr4 (174-210)||(20464804-20464840)
chr4 (173-213)||(30964650-30964690)
[»] scaffold0050 (1 HSPs)
scaffold0050 (222-364)||(36976-37117)
[»] chr3 (20 HSPs)
chr3 (215-364)||(4171006-4171154)
chr3 (224-356)||(50518768-50518898)
chr3 (222-364)||(14194200-14194340)
chr3 (222-364)||(25647953-25648093)
chr3 (214-359)||(33143628-33143770)
chr3 (218-314)||(48893073-48893168)
chr3 (174-319)||(41039379-41039523)
chr3 (236-361)||(14280223-14280345)
chr3 (225-286)||(27399217-27399278)
chr3 (257-326)||(28937430-28937497)
chr3 (286-342)||(14893263-14893318)
chr3 (217-251)||(46358189-46358223)
chr3 (214-287)||(37123643-37123716)
chr3 (220-318)||(7105109-7105209)
chr3 (235-318)||(12086524-12086607)
chr3 (216-247)||(32010025-32010056)
chr3 (291-354)||(37123708-37123770)
chr3 (226-286)||(823184-823244)
chr3 (285-325)||(25594217-25594257)
chr3 (214-286)||(25594296-25594367)
[»] chr7 (19 HSPs)
chr7 (218-312)||(6492852-6492946)
chr7 (221-312)||(24324520-24324610)
chr7 (214-357)||(16828778-16828919)
chr7 (214-357)||(16954751-16954891)
chr7 (237-364)||(42532930-42533055)
chr7 (217-326)||(3478613-3478722)
chr7 (221-364)||(33719235-33719375)
chr7 (222-286)||(28534276-28534340)
chr7 (229-326)||(1321072-1321167)
chr7 (214-315)||(6716455-6716556)
chr7 (292-364)||(36674809-36674880)
chr7 (214-277)||(23983466-23983529)
chr7 (222-275)||(22567888-22567941)
chr7 (306-364)||(6726090-6726147)
chr7 (298-364)||(28534175-28534240)
chr7 (227-277)||(31409757-31409807)
chr7 (233-286)||(40292795-40292848)
chr7 (212-265)||(43235614-43235667)
chr7 (173-213)||(3867329-3867369)
[»] chr6 (7 HSPs)
chr6 (221-364)||(15120273-15120415)
chr6 (259-364)||(20701468-20701570)
chr6 (237-361)||(6860317-6860440)
chr6 (219-278)||(32935098-32935157)
chr6 (286-364)||(3880283-3880360)
chr6 (222-275)||(17278260-17278313)
chr6 (281-325)||(17278171-17278215)
[»] scaffold1384 (1 HSPs)
scaffold1384 (214-339)||(1347-1475)
[»] scaffold0063 (1 HSPs)
scaffold0063 (215-339)||(58391-58513)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 46768219 - 46768587
Alignment:
Q  19 actgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaagcattttcataaa----------------------t 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      |    
T  46768219 actgaggagggtaaactaagtgctctgcaatccacaataattacttcagggtattgttttaaaagcattttcataaaaagagagataattgtacacaaat 46768318  T
Q  97 gtgatgtgatgatgggagttagaggtggcttagctttggtgttcagaattgggagtttagtcttgaggnnnnnnnn-ctttgggggtgagtagtgatgat 195  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||         ||||||||||||||||||| |||    
T  46768319 gtgatgtgatgataggagttagaggtggcttagctttggtgttcaggattgggagtttagtcttgagggttttttttctttgggggtgagtagtgacgat 46768418  T
Q  196 gggcggtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggt 295  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46768419 gggcagtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtggtgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggt 46768518  T
Q  296 gtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46768519 gtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccaatctctg 46768587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 34775136 - 34775266
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||| ||||||| ||||||||||||||||||||||||    
T  34775136 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgtattttggtgggtgttgtcctcattggtattttttaaggtgtttattttcgggtgttccgc 34775235  T
Q  317 ctacatacgggcgccttttgtttgtatgctca 348  Q
    ||| |||| ||||||||| |||||||| ||||    
T  34775236 ctatatac-ggcgcctttagtttgtattctca 34775266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 177 - 343
Target Start/End: Original strand, 32882583 - 32882756
Alignment:
Q  177 gggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggt 268  Q
    ||||||||||||||| |||||| ||||||||||||||        ||| ||||||||||||||||||| |||||||| | ||| ||  ||||||||||||    
T  32882583 gggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgctcgttttcgtgaaggagtcagttttaggcggtgatgtatattttggtgggt 32882682  T
Q  269 gttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 343  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||||||| ||||||||    
T  32882683 gttgtcctcgggggtgtcttttagggtgtttattttcgggtgttctgcctatatac-ggcgcctttagtttgtat 32882756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 10785278 - 10785180
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccg 315  Q
    ||||||||||||||||||||||||||| ||||| || || |||||| ||||||||||||||  |||||||||||| ||||||||| || ||||||||||    
T  10785278 gtcgttttcgtgaaggagtctgttttaagtgataacatgtattttgatgggtgttgtcctcaagggtgttttttaaggtgtttatatttgggtgttccg 10785180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 212 - 361
Target Start/End: Complemental strand, 11439840 - 11439694
Alignment:
Q  212 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgt 311  Q
    ||||||| | |||||||||||  ||||||||||||| ||||||| |||||||||| ||||||| || |||  |  ||||||||||||||||||||| |||    
T  11439840 cggtggttgctttcgtgaagggatctgttttaggtggtgacgtgtattttggtggatgttgtcttcaggg--ggattttagggtgtttattttcggatgt 11439743  T
Q  312 tccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatct 361  Q
    |||| ||| |||  | |||||||||||||||| |||| ||||||||||||    
T  11439742 tccgtctatata-tgtcgccttttgtttgtattctcattttcaccgatct 11439694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 32863365 - 32863255
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    |||||||||||||| |||| ||||||||||| | ||||||| || ||||||||||||||||||  ||||||||||   ||||||||||||| ||||||||    
T  32863365 tggtcgttttcgtggaggattctgttttaggcggtgacgtgtatgttggtgggtgttgtcctcttgggtgtttttcttggtgtttattttcaggtgttcc 32863266  T
Q  315 gcctacatacg 325  Q
    ||||| |||||    
T  32863265 gcctatatacg 32863255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 6583061 - 6582968
Alignment:
Q  224 tcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcc 317  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||||| || ||  | |||||||||| |||||||||||||||||||||||||    
T  6583061 tcgtgtaggagtctgttttaggtggtgacgtgtattttggtgggtgttatcatcatgagtgttttttatggtgtttattttcgggtgttccgcc 6582968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 173 - 326
Target Start/End: Original strand, 16148988 - 16149149
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg-------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtg 265  Q
    ||||||||||||||||||| |||||| | | ||||||||||       || ||||||| | |||||| |||||||||||||| ||||||| ||||| | |    
T  16148988 ctttgggggtgagtagtgacgatgggtgcttttggatatcgtttttcagtagtcgtttacatgaaggtgtctgttttaggtggtgacgtgtattttagcg 16149087  T
Q  266 gg-tgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 326  Q
    || | ||||||||  || ||| |||||||||||||||||||| |||||||||||| ||||||    
T  16149088 ggcttttgtcctcaaggttgtcttttagggtgtttattttcgcgtgttccgcctatatacgg 16149149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 348
Target Start/End: Original strand, 27102488 - 27102576
Alignment:
Q  257 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctca 348  Q
    |||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||    
T  27102488 attttggtgggtgttgtcctc-atggtg-tttttagggtgtttattttcgggtgttccgcctatatac-ggcaccttttgtttgtattctca 27102576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 16577521 - 16577579
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 272  Q
    ||||||||||||||||| |||||||||||||||||||| ||  ||||||||||||||||    
T  16577521 gtggtcgttttcgtgaaagagtctgttttaggtgatgatgtttattttggtgggtgttg 16577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 214 - 323
Target Start/End: Complemental strand, 31290839 - 31290732
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||||||||||| ||||||||||| |||||||| ||| ||| || | |  |||  |||||||| ||||||||||| | |||||||||||||||||||||    
T  31290839 gtggtcgttttcgcgaaggagtctgatttaggtggtgatgtgtatat-gaagggaattgtcctcaggggtgttttt-atggtgtttattttcgggtgttc 31290742  T
Q  314 cgcctacata 323  Q
    || |||||||    
T  31290741 cgtctacata 31290732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 9313088 - 9313011
Alignment:
Q  286 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||| ||||||  | | |||||||| ||||||    
T  9313088 tttttagggtgtttattttcgggtgttccgcctatatac-gacgccttttgattgtattataagtttcaccggtctctg 9313011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 52278547 - 52278648
Alignment:
Q  213 ggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 312  Q
    |||||||||||||||| ||| || ||||  ||||| || ||||  ||||||||||||||||||||| || ||| ||| ||| ||||||||||| ||||||    
T  52278547 ggtggtcgttttcgtgtaggcgt-tgttcgaggtggtggcgtg--ttttggtgggtgttgtcctcgtgg-tgtctttaagg-tgtttattttcaggtgtt 52278641  T
Q  313 ccgccta 319  Q
    |||||||    
T  52278642 ccgccta 52278648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 4431008 - 4431084
Alignment:
Q  286 tttttagggtgtttattttcgggtgttcc-gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    ||||||||||||| |||||  |||||||| ||||  |||||| |||||||||||||||| ||||||||||||| |||||    
T  4431008 tttttagggtgtt-atttttaggtgttcccgcctttatacgg-cgccttttgtttgtattctcaatttcaccggtctct 4431084  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 46603632 - 46603732
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 321  Q
    |||||||||| |||||||||||| || |||  |  |||||||||||||||||| || ||||| |||| |   || ||||||||||||||||||||||| |    
T  46603632 tttcgtgaagaagtctgttttagatggtga-ttttattttggtgggtgttgtcttcaggggtcttttatgatgt-tttattttcgggtgttccgcctata 46603729  T
Q  322 tac 324  Q
    |||    
T  46603730 tac 46603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 343
Target Start/End: Original strand, 42374526 - 42374573
Alignment:
Q  295 tgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 343  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||    
T  42374526 tgtttattttcgggtgttccgcctatata-tggcgccctttgtttgtat 42374573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 49820486 - 49820526
Alignment:
Q  284 gttttttagggtgtttattttc-gggtgttccgcctacata 323  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  49820486 gttttttatggtgtttattttccgggtgttccgcctacata 49820526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 178 - 364
Target Start/End: Complemental strand, 26045827 - 26045634
Alignment:
Q  178 ggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtg 269  Q
    |||||||||||||| |||||| |||||||||| |||        |||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  26045827 ggggtgagtagtgacgatgggaggtgttggatttcgtttttaccgtggtcattttcatgaagaagtctgttttaggtggtgacgtgaattttggtgggtg 26045728  T
Q  270 ttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||| |||| ||||||||||||||||||||| || ||||||| ||| |||| |||||||||||||||||||||||| ||||||| ||||||    
T  26045727 ttgtcctcaggggcgttttttagggtgtttatttttggatgttccgtctatatac-ggcgccttttgtttgtatgctcaacttcaccggtctctg 26045634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 30097600 - 30097722
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 319  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||  || |||||||||||||||||||||||||||||||||||||    
T  30097600 gttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgttttttagggtgtttattttcgggtgttccgccta 30097699  T
Q  320 catacgggcgccttttgtttgtat 343  Q
     |||| |||| |||| ||||||||    
T  30097700 tatac-ggcgtctttagtttgtat 30097722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 227 - 357
Target Start/End: Complemental strand, 26405354 - 26405226
Alignment:
Q  227 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 326  Q
    ||||| ||||||||||||||| ||||||| |||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||| ||| |||| |    
T  26405354 tgaagaagtctgttttaggtggtgacgtgtattttggtggttgttgtcctcaggggtgt-ttttaaggtgtttattttcgggtgttccgactatatac-g 26405257  T
Q  327 gcgccttttgtttgtatgctcaatttcaccg 357  Q
     |||||||||||||||| |||| ||||||||    
T  26405256 acgccttttgtttgtattctcagtttcaccg 26405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 233 - 355
Target Start/End: Complemental strand, 13954049 - 13953928
Alignment:
Q  233 agtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgcct 332  Q
    ||||||||||||| |||||| || ||||||||||| |||||||||  |||| ||||||| ||||||||||||| ||||||||||||| |||| |||||||    
T  13954049 agtctgttttaggagatgacatgtattttggtgggagttgtcctcaagggtattttttaaggtgtttattttcaggtgttccgcctatatac-ggcgcct 13953951  T
Q  333 tttgtttgtatgctcaatttcac 355  Q
    || |||||||  |||| ||||||    
T  13953950 ttagtttgtactctcagtttcac 13953928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 7195114 - 7195019
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||| | | |||| ||||||||||||||||||| || ||||||||    
T  7195114 gtttttgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtccgcagcggtg-tttttagggtgtttatttttggatgttccgc 7195019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 14302262 - 14302124
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    |||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||| || ||||||| ||||||| | |||||||| |||||||||    
T  14302262 tggtcgttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgt-ttttaggatttttatttttgggtgttcc 14302164  T
Q  315 gcctacatacgggcgccttttgtttgtatgctcaatttcac 355  Q
      ||| |||| |||| || |||||| |||  ||||||||||    
T  14302163 ttctatatac-ggcgtctcttgtttatattttcaatttcac 14302124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 364
Target Start/End: Original strand, 10174942 - 10175089
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    |||||||||||   |||||||||||||||||||| | ||||| | ||||||||||||||||||||| |||| |||||||| |||||| |||| ||||||     
T  10174942 gtggtcgttttttagaaggagtctgttttaggtggttacgtgtactttggtgggtgttgtcctcggaggtg-tttttaggatgttta-tttcaggtgttt 10175039  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
     ||||| |||| |  ||||||||||||||| || |||||||||| ||||||    
T  10175040 tgcctatatac-gatgccttttgtttgtattcttaatttcaccggtctctg 10175089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 214 - 356
Target Start/End: Complemental strand, 33110017 - 33109881
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| | ||| |   ||||||  |||||||||||||||||||     
T  33110017 gtggtcgttttcgtgaaggggtttgttttaggtgatgacgtgtattttggtgggtgttgtcatagggtg---tttttaaagtgtttattttcgggtgttt 33109921  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcacc 356  Q
    || ||| | |   ||| ||||||||||||| |||| |||||||    
T  33109920 cggctataca---gcgtcttttgtttgtattctcagtttcacc 33109881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 8297734 - 8297880
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    ||||| ||||| ||||||||| ||||||||||| ||| ||| |||||||||| |||| ||||| |||||| |||||||||||| ||||||| ||||||||    
T  8297734 tggtctttttcttgaaggagtgtgttttaggtggtgatgtgtattttggtggatgttatcctcaggggtg-tttttagggtgtgtattttcaggtgttcc 8297832  T
Q  315 gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||  |||   |||||||| ||||||| |||| |||||||| ||||||    
T  8297833 gcctatgtac-aacgcctttt-tttgtattctcagtttcaccggtctctg 8297880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 212 - 356
Target Start/End: Original strand, 7682813 - 7682955
Alignment:
Q  212 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgt 311  Q
    ||||||||||||| ||||| |||||| ||||||||| ||| ||| ||||||||||||||||| |||    || |||||| ||||| |||||||||| |||    
T  7682813 cggtggtcgtttttgtgaaagagtctattttaggtggtgatgtgtattttggtgggtgttgttctcataagtatttttt-gggtgcttattttcggatgt 7682911  T
Q  312 tccgcctacatacgggcgccttttgtttgtatgctcaatttcacc 356  Q
    |||||||| |||| | |||||||  ||||||| |||| |||||||    
T  7682912 tccgcctatatac-gacgcctttaatttgtattctcagtttcacc 7682955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 257 - 364
Target Start/End: Original strand, 25992307 - 25992411
Alignment:
Q  257 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcacc 356  Q
    |||||||||||||||||| | |||| |||||| ||||||||||||| ||||||||||||| || |||| ||||||||||||||||||  ||| |||||||    
T  25992307 attttggtgggtgttgtcattgggg-tgtttt-tagggtgtttattgtcgggtgttccgcatatatac-ggcgccttttgtttgtattatcattttcacc 25992403  T
Q  357 gatctctg 364  Q
    | ||||||    
T  25992404 ggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 21398133 - 21398054
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgttt 299  Q
    ||||||||||||| ||||||||||| || ||||||| ||||| ||  ||||||||||| ||||||||||||| |||||||    
T  21398133 gttttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgttttttaaggtgttt 21398054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 367
Target Start/End: Original strand, 5187219 - 5187355
Alignment:
Q  229 aaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggc 328  Q
    |||||||||| |||||||| ||| ||| | || ||||| |||| |||||  | ||| |||| | |||||||||||||||||| | |  ||| || | |||    
T  5187219 aaggagtctggtttaggtggtgatgtgtacttgggtggatgttatcctcatgagtgctttt-atggtgtttattttcgggtgcttcatctatatgc-ggc 5187316  T
Q  329 gccttttgtttgtatgctcaatttcaccgatctctgctc 367  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  5187317 gccttttgtttgtattctcaatttcaccgatctctgctc 5187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 325
Target Start/End: Complemental strand, 4914315 - 4914208
Alignment:
Q  219 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtg-ttttttagggtgtttattttcgggtgttccgcc 317  Q
    |||||||||||| ||||||| |||||||| ||| ||| ||||||||||||||  ||||| || ||| |||||||| | ||||||| |||| ||||||||     
T  4914315 cgttttcgtgaaagagtctgatttaggtggtgaagtgtattttggtgggtgtaatcctcaggagtgtttttttagagggtttattatcggatgttccgca 4914216  T
Q  318 tacatacg 325  Q
    || |||||    
T  4914215 tatatacg 4914208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 7403669 - 7403737
Alignment:
Q  237 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgg 307  Q
    |||||| |||| |||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||||    
T  7403669 tgttttcggtggtgacgtgaattttggtgggtgttgtcttcatgg--gttttttagggtgtttattttcgg 7403737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 31742504 - 31742552
Alignment:
Q  293 ggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgta 342  Q
    ||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  31742504 ggtgtttgttttcgggtgttccgcctatatac-ggcgccttttgtttgta 31742552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 37108104 - 37108170
Alignment:
Q  257 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatac 324  Q
    ||||||||||||||| |||||  ||||||||| |||||||||||||||  | ||||||||||| ||||    
T  37108104 attttggtgggtgttatcctcatgggtgtttt-tagggtgtttattttttgatgttccgcctatatac 37108170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 343
Target Start/End: Complemental strand, 24072014 - 24071953
Alignment:
Q  281 ggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 343  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||| |||||| || ||||||||    
T  24072014 ggtgtcttttatgatgtttattttcgggtgttccgcctatatac-ggcgcccttagtttgtat 24071953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 33258637 - 33258560
Alignment:
Q  286 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||| |||||||||||||||||||| | | || |||| |||||||||| |||||||   ||||||||||| ||||||    
T  33258637 tttttatggtgtttattttcgggtgtttcacatatatac-ggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 173 - 363
Target Start/End: Complemental strand, 17656605 - 17656408
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgtttt-cgtgaaggagtctgttttaggtgatgacgtgaattttgg 263  Q
    |||||||||||||||||||  ||| ||||||||||||||||        ||||||||||| | |||||||||||||||||| || |||||||||||||||    
T  17656605 ctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttgg 17656506  T
Q  264 tgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    ||||||||||||||  ||||| ||||||||||||| |||||||||||||||| ||| |||| | |||||||||||| |||| |||||||||||| |||||    
T  17656505 tgggtgttgtcctcaagggtg-tttttagggtgttaattttcgggtgttccgtctatatac-gacgccttttgtttatatgttcaatttcaccggtctct 17656408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 214 - 354
Target Start/End: Complemental strand, 10248386 - 10248246
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtg-tttattttcgggtgtt 312  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||  |||||||||||| |||| ||| |||| |||||||    
T  10248386 gtggtcgttttcgtgaaggagtttgttttaggtggtgacgtgtattttggcgggtgttgtcctcaagggtgttttttaaggtgtttttttttagggtgtt 10248287  T
Q  313 ccgcctacatacgggcgccttttgtttgtatgctcaatttca 354  Q
    ||||||| |||| | ||||||| | |||||| |||| |||||    
T  10248286 ccgcctatatac-gacgcctttaggttgtattctcagtttca 10248246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 215 - 342
Target Start/End: Complemental strand, 8862441 - 8862314
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgttta-ttttcgggtgttc 313  Q
    |||| ||| ||||| | ||||| |||||||||| ||||||| ||||| ||||||||||||||  ||||||||||||| |||||||| ||||||| |||||    
T  8862441 tggttgttctcgtgtaagagtcagttttaggtggtgacgtgtatttttgtgggtgttgtccttcggggtgttttttatggtgtttatttttcggatgttc 8862342  T
Q  314 cgcctacatacgggcgccttttgtttgta 342  Q
    || ||| |||| |||||||||||||||||    
T  8862341 cgtctatatac-ggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 363
Target Start/End: Complemental strand, 12197943 - 12197747
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 264  Q
    ||||||||||||||||||| || ||| |||| |||||||||        |||||||| ||| |||||| ||||||| |||||| ||||||| ||||| ||    
T  12197943 ctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgt 12197844  T
Q  265 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    || |||||||| | | ||||| |||||||||||||||||||  |||||||||||| | || | ||||||| |||||||| |||   |||||||||||||    
T  12197843 gg-tgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagac-gacgcctttagtttgtattctctgattcaccgatctct 12197747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 363
Target Start/End: Complemental strand, 12442371 - 12442175
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 264  Q
    ||||||||||||||||||| || ||| |||| |||||||||        |||||||| ||| |||||| ||||||| |||||| ||||||| ||||| ||    
T  12442371 ctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagtggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttttgt 12442272  T
Q  265 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    || |||||||| | | ||||| |||||||||||||||||||  |||||||||||| | || | ||||||| |||||||| |||   |||||||||||||    
T  12442271 gg-tgttgtccccagaggtgtcttttagggtgtttattttcccgtgttccgcctatagac-gacgcctttagtttgtattctctgattcaccgatctct 12442175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 2273860 - 2273769
Alignment:
Q  219 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    |||||||||||||||||||||||     | ||||||| |||| ||||||||||||| ||  || | ||||||||||||||||||||| ||||||||||    
T  2273860 cgttttcgtgaaggagtctgttt-----ggtgacgtgtattt-ggtgggtgttgtcatccaggatattttttagggtgtttattttcaggtgttccgc 2273769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 43312458 - 43312375
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtt 298  Q
    ||||||||||| ||| ||||||||| |||||||| |||| || |||||| ||||||||||  || | ||||||||||||| ||||    
T  43312458 gtggtcgtttttgtgtaggagtctgatttaggtggtgacatgtattttgatgggtgttgt-ttcagcggtgttttttaggatgtt 43312375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 7696224 - 7696371
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    ||||||||||||||||||||| | ||||||||| ||| ||| |||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  7696224 tggtcgttttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgtcctcgggggtg-tttttaaggtgtttatttttgggtgttcc 7696322  T
Q  315 gcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    ||||| |||| ||  |||||||||||||| |||||||||| || ||||||    
T  7696323 gcctatatac-ggttccttttgtttgtattctcaatttcatcggtctctg 7696371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 173 - 364
Target Start/End: Complemental strand, 37770509 - 37770324
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 272  Q
    ||||||||| ||||||||| || ||| ||||||||||    ||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |     
T  37770509 ctttgggggcgagtagtgacgacgggtggtgttggattatagtggtggttttcgtgaaggagtctgttttaggtggtgacgtggattttggtgggtggta 37770410  T
Q  273 tcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||   |||| |||||||||||||||||||||||||||||||||| |||| | |||   |||||||||| ||||  ||||||||||||||    
T  37770409 tcctc-atggtg-tttttagggtgtttattttcgggtgttccgcctatatac-gacgc---ttgtttgtattctcatattcaccgatctctg 37770324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 4975006 - 4975134
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    |||||||||||||||||| ||||||||||||||| ||  ||| | ||||||||||||| |||||  || ||||||| |||||||||||||||||||||||    
T  4975006 gtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgtttattttcgggtgttc 4975105  T
Q  314 cgcctacatacgggcgccttttgtttgtat 343  Q
     ||||| |||| | ||||||| ||||||||    
T  4975106 agcctatatac-gacgcctttagtttgtat 4975134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 343
Target Start/End: Original strand, 4992914 - 4993042
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    |||||||||||||||||| ||||||||||||||| ||  ||| | ||||||||||||| |||||  || ||||||| |||||||||||||||||||||||    
T  4992914 gtggtcgttttcgtgaagaagtctgttttaggtggtggtgtgtaatttggtgggtgttatcctcaaggatgtttttcagggtgtttattttcgggtgttc 4993013  T
Q  314 cgcctacatacgggcgccttttgtttgtat 343  Q
     ||||| |||| | ||||||| ||||||||    
T  4993014 agcctatatac-gacgcctttagtttgtat 4993042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 364
Target Start/End: Original strand, 13337561 - 13337660
Alignment:
Q  263 gtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctc 362  Q
    ||||||||||||||| |||||||||| |||||||||||||||| |||||||| |||| |||| | |||||||||||||||| |||  |||||||| ||||    
T  13337561 gtgggtgttgtcctcaggggtgtttt-tagggtgtttattttcaggtgttccacctatatac-gacgccttttgtttgtattctctgtttcaccggtctc 13337658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 41113554 - 41113450
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    ||||||||||||||||||||||||||||||  | ||||  |||||||||||||    ||||  |||||||||||||||| ||||||||||| ||||||||    
T  41113554 gtcgttttcgtgaaggagtctgttttaggtagtaacgtttattttggtgggtgc---cctcatgggtgttttttagggtatttattttcggatgttccgc 41113458  T
Q  317 ctacatac 324  Q
    ||| ||||    
T  41113457 ctatatac 41113450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 214 - 364
Target Start/End: Original strand, 34230464 - 34230610
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||||||||||||| | |||||||||| || || ||||||| |||||||||| |||||| ||  |||||| |||||| | ||||||||||  |||||||    
T  34230464 gtggtcgttttcgtggaagagtctgttt-agatggtgacgtgtattttggtggatgttgttctaaggggtg-tttttacgatgtttattttttggtgttc 34230561  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||| |||| |||| ||||||||||||| | | | ||||||||||||||    
T  34230562 cgcctatatac-ggcgtcttttgtttgtattcgc-agttcaccgatctctg 34230610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 12343081 - 12343142
Alignment:
Q  216 ggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 277  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||    
T  12343081 ggtcgttttcgtgaaggagtctgttttaggtggtgacgtgtattttgatggatgttgtcctc 12343142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 10173396 - 10173289
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    ||||||||| |||||  ||||||||||||   |||| || |||||| ||||| |||||||| | ||| | ||||||||||||||||||| ||||||||||    
T  10173396 gtcgttttcatgaagacgtctgttttaggccgtgacatgtattttgatgggtattgtcctcagaggtatcttttagggtgtttattttcaggtgttccgc 10173297  T
Q  317 ctacatac 324  Q
    ||| ||||    
T  10173296 ctatatac 10173289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 364
Target Start/End: Original strand, 29997220 - 29997355
Alignment:
Q  227 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 326  Q
    ||||||| |||||||||| || ||||||  ||||| || || || |||||| ||| || |||| ||| ||||||||||||| |||||||| || |||| |    
T  29997220 tgaaggaatctgttttagatggtgacgtatattttagtaggagtggtcctcagggatgatttt-aggatgtttattttcggatgttccgcttatatac-g 29997317  T
Q  327 gcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    | ||||||||||| |||  ||||||||| || ||||||    
T  29997318 gtgccttttgtttttattttcaatttcatcggtctctg 29997355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 41086570 - 41086475
Alignment:
Q  267 gtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||| || ||||||||||| ||||| |||||||||||||||| |||||| |||| |  || |||| |||||||||||| |||||| | ||||||    
T  41086570 gtgttgtcttcaggggtgttttt-agggtatttattttcgggtgtttcgcctatatac-gatgctttttctttgtatgctcagtttcactggtctctg 41086475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 22884869 - 22884806
Alignment:
Q  279 ggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtat 343  Q
    |||||||||| || || |||||||||||||||||||||||| |||| | ||||||| ||||||||    
T  22884869 ggggtgttttgtatggagtttattttcgggtgttccgcctatatac-gacgcctttagtttgtat 22884806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 364
Target Start/End: Original strand, 4472269 - 4472353
Alignment:
Q  279 ggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||| |||||| ||||||||||||||| ||||||| ||| |||| | ||||||| |||||||| |||   |||||||| |||||    
T  4472269 ggggtgatttttatggtgtttattttcggatgttccgtctatatac-gacgcctttagtttgtattctctgattcaccgaactctg 4472353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 272
Target Start/End: Complemental strand, 27879970 - 27879913
Alignment:
Q  216 ggtcgttttcgtgaaggagtctgttttaggtgatgacg-tgaattttggtgggtgttg 272  Q
    |||||||||| ||||||||||||||||||||| ||| | | | |||||||||||||||    
T  27879970 ggtcgttttcctgaaggagtctgttttaggtggtgatgtttatttttggtgggtgttg 27879913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 215 - 356
Target Start/End: Original strand, 49747790 - 49747930
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| | ||||||||||| |||||||||||| || ||||||    
T  49747790 tggtcgttttcgtgaaagagtctgttttaggtggtgacatgaattttggtgggtgttgtcctcagaggtgttttttatggtgtttatttttggatgttcc 49747889  T
Q  315 gcctacatacgggcgccttttgtttgtatgctcaatttcacc 356  Q
    || || |||| |  | |||||||||||||||| |||||||||    
T  49747890 gcatatatac-gatgtcttttgtttgtatgctaaatttcacc 49747930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 220 - 364
Target Start/End: Complemental strand, 38637047 - 38636905
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 319  Q
    |||||||||||||||| ||||||||||| |||| || ||||| ||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||    
T  38637047 gttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtgggtgttgtcctcgggggttttatttaaggtgtttattttcaggtgttccgccta 38636948  T
Q  320 catacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
     |||| ||||||| |||||||||  |||| |||||||| ||||||    
T  38636947 -atac-ggcgcctcttgtttgtagtctcattttcaccggtctctg 38636905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 220 - 356
Target Start/End: Complemental strand, 41117781 - 41117647
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 319  Q
    ||||||||| | ||||||||| |||||| |||  || |||||||||||||||||||||  || |||| ||||||||||||||||||||||||||||||||    
T  41117781 gttttcgtgcatgagtctgttctaggtggtgatatgtattttggtgggtgttgtcctcatgg-tgttatttagggtgtttattttcgggtgttccgccta 41117683  T
Q  320 catacgggcgccttttgtttgtatgctcaatttcacc 356  Q
     |||| |  |||| |||||||||  ||||||||||||    
T  41117682 tatac-gatgcctcttgtttgtagtctcaatttcacc 41117647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 221 - 364
Target Start/End: Complemental strand, 16832831 - 16832691
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 320  Q
    |||||||| |||| | ||||||||||| ||||||  |||| |||||||||||||||| || | |||||| ||||||||||||||  |||||||||||||     
T  16832831 ttttcgtgcaggaatatgttttaggtggtgacgtttattt-ggtgggtgttgtcctcaggagagttttt-agggtgtttattttttggtgttccgcctat 16832734  T
Q  321 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    || | | |||||||||||||||| |||| |||||||||| ||||    
T  16832733 atgcag-cgccttttgtttgtattctcagtttcaccgatttctg 16832691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 221 - 305
Target Start/End: Complemental strand, 53823232 - 53823151
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttc 305  Q
    |||| |||||||||||||||   |||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||||||||    
T  53823232 tttttgtgaaggagtctgtt---ggtgatgacgtgtattttggtgggtgttatcctcaggggtattttttagggtgtttattttc 53823151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 19311181 - 19311081
Alignment:
Q  218 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcc 317  Q
    |||||||||||||||| |||||||  |||| ||||||| ||||||||||||||| ||| | |||| | ||||||||||||||| |||||| |||||||||    
T  19311181 tcgttttcgtgaaggaatctgtttatggtggtgacgtgtattttggtgggtgttatccccaggggag-tttttagggtgtttaatttcggatgttccgcc 19311083  T
Q  318 ta 319  Q
    ||    
T  19311082 ta 19311081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 325
Target Start/End: Complemental strand, 39420904 - 39420745
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg--------gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggt 264  Q
    ||||||| ||||||||||| || ||| ||||||||||||||        ||||| ||| ||||| ||||||| ||||||| || ||||||| ||||||||    
T  39420904 ctttgggtgtgagtagtgacgacgggtggtgttggatatcgtttatacggtggttgttctcgtgtaggagtcagttttagatggtgacgtgtattttggt 39420805  T
Q  265 gggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacg 325  Q
    || |||| | |||  | |||||||||| |||||| |||||||||||||||||||| |||||    
T  39420804 gg-tgttatgctcatgagtgttttttatggtgttcattttcgggtgttccgcctatatacg 39420745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 25753442 - 25753503
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcggggg 282  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||    
T  25753442 ttttcgtgaaggagtttgttttaggtgatgacttgtattttggtgggtgttgtcctcagggg 25753503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 52009101 - 52009184
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtt 298  Q
    ||||||| || | ||| ||||||||||||||||| || ||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  52009101 gtggtcgcttccatgacggagtctgttttaggtggtggcgtgatttttggtggg-gttgtcctcaggggtgttttttagggtgtt 52009184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 364
Target Start/End: Original strand, 28967206 - 28967285
Alignment:
Q  284 gttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||||||||||| ||||||||||||| ||||  |||||||| ||||||||  ||  |||||||||||||||    
T  28967206 gttttttagggtgtttattttcaggtgttccgcctatatac-agcgcctttcgtttgtattatctgtttcaccgatctctg 28967285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 362
Target Start/End: Original strand, 48098645 - 48098714
Alignment:
Q  292 gggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctc 362  Q
    |||||||||||||||||||||||||||| ||||  ||| |||||||||||||  ||| |||||||||||||    
T  48098645 gggtgtttattttcgggtgttccgcctatatac-tgcgtcttttgtttgtattttcagtttcaccgatctc 48098714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 324
Target Start/End: Complemental strand, 2061627 - 2061542
Alignment:
Q  239 ttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatac 324  Q
    ||||||||| |||| || |||||| ||||||||| |||| ||||| |||||||| ||||||||| || | ||||||||||| ||||    
T  2061627 ttttaggtggtgacttgtattttgatgggtgttgccctcaggggtattttttagtgtgtttattatcagatgttccgcctatatac 2061542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 287
Target Start/End: Complemental strand, 22810980 - 22810907
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttt 287  Q
    ||||||| |||||||||| ||||||||||||| | ||||||| |||||||||||||  ||||||  ||||||||    
T  22810980 gtggtcggtttcgtgaagcagtctgttttaggaggtgacgtgtattttggtgggtgaggtcctctagggtgttt 22810907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 49528333 - 49528390
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgtt 271  Q
    ||||||| | || ||||||||||| |||||||||||||||||  ||||||||||||||    
T  49528333 gtggtcggtgtcatgaaggagtctattttaggtgatgacgtgttttttggtgggtgtt 49528390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 52009178 - 52009234
Alignment:
Q  306 gggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    |||||||||||||| |||||| |||||| |||||| ||||||| ||||||||||||||    
T  52009178 gggtgttccgcctatatacgg-cgccttatgtttgcatgctcagtttcaccgatctct 52009234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 42719494 - 42719565
Alignment:
Q  291 agggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctct 363  Q
    ||||||||||||||| ||| |||||| || |||||| || ||||||||||||| |||| |||||||| |||||    
T  42719494 agggtgtttattttcaggttttccgcttatatacgg-cgtcttttgtttgtattctcagtttcaccggtctct 42719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 19815041 - 19814939
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggt---gatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtg 310  Q
    |||||| |||||||||||  |||||||| ||||   | |||||||  ||||||||||||||||||| |   |||| ||||| | |||||||||| |||||    
T  19815041 gtggtcattttcgtgaagacgtctgtttgaggtactggtgacgtgttttttggtgggtgttgtccttgaaagtgtcttttatgatgtttatttttgggtg 19814942  T
Q  311 ttc 313  Q
    |||    
T  19814941 ttc 19814939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 20464804 - 20464840
Alignment:
Q  174 tttgggggtgagtagtgatgatgggcggtgttggata 210  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  20464804 tttgggggtgagtagtgacgatgggcggtggtggata 20464840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 30964650 - 30964690
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg 213  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  30964650 ctttgtgggtgagtagtgatgatgggcggtggtgaatatcg 30964690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 36976 - 37117
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 321  Q
    |||||||||||||||||||||||||| ||||||| |||||| ||||||| ||||||  |||||||||||| ||||||||||||||| ||||||||||| |    
T  36976 tttcgtgaaggagtctgttttaggtggtgacgtgtattttgttgggtgtggtcctcatgggtgttttttatggtgtttattttcggatgttccgcctata 37075  T
Q  322 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||  ||| |||||||||||||  ||| |||||||| ||||||    
T  37076 tac-agcgtcttttgtttgtattatcagtttcaccggtctctg 37117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 215 - 364
Target Start/End: Original strand, 4171006 - 4171154
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgt-gaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||| ||||||||||||||||| ||||||||||||||||  | |||| |||||||||||||||   | || |||||||||||||||||||| |||||||    
T  4171006 tggtcattttcgtgaaggagtctattttaggtgatgacgtatattttttgtgggtgttgtcctcaatgatg-tttttagggtgtttattttcaggtgttc 4171104  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||| |||| | |||||||||||||||| |||| |||||||| ||||||    
T  4171105 cgcctatatac-gacgccttttgtttgtattctcagtttcaccggtctctg 4171154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 50518898 - 50518768
Alignment:
Q  224 tcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacata 323  Q
    ||||||||||||||||||||| || ||| ||| |||||| ||||||| ||||||  |||||||||| ||||||||||||||||||||||||||||| |||    
T  50518898 tcgtgaaggagtctgttttagatggtgaggtgtattttgttgggtgtggtcctcatgggtgttttt-agggtgtttattttcgggtgttccgcctatata 50518800  T
Q  324 cgggcgccttttgtttgtatgctcaatttcacc 356  Q
    | | | |||||||||||||| |||| |||||||    
T  50518799 c-gacaccttttgtttgtattctcagtttcacc 50518768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 14194200 - 14194340
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 321  Q
    |||||||| ||||||||||||||||| ||||||| |||||||||||||| ||||||  | ||| |||||||| ||||||||||||| ||||||||||| |    
T  14194200 tttcgtgatggagtctgttttaggtggtgacgtgtattttggtgggtgtggtcctcatgagtg-tttttaggatgtttattttcggatgttccgcctata 14194298  T
Q  322 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    ||  ||| |||||||||||| | |||| |||||| | ||||||    
T  14194299 ta-aggcaccttttgtttgtgttctcagtttcactggtctctg 14194340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 364
Target Start/End: Original strand, 25647953 - 25648093
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctaca 321  Q
    |||||||| ||||| ||||||| ||| |||| ||   |||||||||||| ||||||  | ||||||| |||||||||||||||||||||||||| ||| |    
T  25647953 tttcgtgatggagtatgttttatgtggtgacatgttatttggtgggtgtggtcctcatgtgtgtttt-tagggtgtttattttcgggtgttccgtctata 25648051  T
Q  322 tacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||  ||||||||||||||||| || | |||||||||||||||    
T  25648052 tac-tgcgccttttgtttgtattcttagtttcaccgatctctg 25648093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 359
Target Start/End: Complemental strand, 33143770 - 33143628
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||| |||||||||||||||| ||||||||||| |||||||  || |||||| |||| |||||  ||| ||||||| |||||||| |||||||||||||    
T  33143770 gtggtggttttcgtgaaggagtttgttttaggtggtgacgtgttttatggtggatgttatcctcttgggagtttttt-gggtgttt-ttttcgggtgttc 33143673  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccgat 359  Q
    |||||| |||  | ||||||||| |||||| |||| ||||||||||    
T  33143672 cgcctatata-tgacgccttttggttgtattctcagtttcaccgat 33143628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 218 - 314
Target Start/End: Complemental strand, 48893168 - 48893073
Alignment:
Q  218 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    ||||||| || ||||||||| ||||||||| |||| || |||||||||||||||||| || ||||||| |||||  |||||||||||||| ||||||    
T  48893168 tcgtttttgtaaaggagtctcttttaggtggtgacatgtattttggtgggtgttgtcttcaggggtgt-ttttaaagtgtttattttcggatgttcc 48893073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 319
Target Start/End: Original strand, 41039379 - 41039523
Alignment:
Q  174 tttgggggtgagtagtgatgatgggcggtgttggatatcggt-ggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttg 272  Q
    |||||||||||||||||| |||| |  || ||| |||||| | ||||| ||| ||||| || ||||||||||||||| |  |   |||||||||||||||    
T  41039379 tttgggggtgagtagtgaagatgtgtagtattgtatatcgtttggtcgcttttgtgaaagaatctgttttaggtgataatattt-ttttggtgggtgttg 41039477  T
Q  273 tcctcgggggtgttttttagggtgtttattttcgggtgttccgccta 319  Q
    || ||  ||||||||| |||||||||||||||| |||||||||||||    
T  41039478 tcttcacgggtgtttt-tagggtgtttattttctggtgttccgccta 41039523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 14280345 - 14280223
Alignment:
Q  236 ctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgcctttt 335  Q
    |||||||||||| ||||||| ||||| |||||||||||||||   ||   |||| || ||||||| |||||||||||||||||| |||| |||||||||     
T  14280345 ctgttttaggtggtgacgtgtattttagtgggtgttgtcctc--aggatattttcagagtgtttactttcgggtgttccgcctatatac-ggcgccttta 14280249  T
Q  336 gtttgtatgctcaatttcaccgatct 361  Q
     |||||||  ||| ||||| ||||||    
T  14280248 atttgtattatcagtttcatcgatct 14280223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Original strand, 27399217 - 27399278
Alignment:
Q  225 cgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 286  Q
    |||||||||| |||||||||||||||| ||  |||||||||||||||||||||  |||||||    
T  27399217 cgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgtt 27399278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 326
Target Start/End: Complemental strand, 28937497 - 28937430
Alignment:
Q  257 attttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 326  Q
    |||||||||||||||||| | |||| ||||||| |||||||||||||||||||||||||| || ||||||    
T  28937497 attttggtgggtgttgtcattgggg-tgttttt-agggtgtttattttcgggtgttccgcttatatacgg 28937430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 14893263 - 14893318
Alignment:
Q  286 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgta 342  Q
    |||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||    
T  14893263 tttttagggtgtttattttcaggtgttccgcctatatac-ggcgtcttttgtttgta 14893318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 46358223 - 46358189
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatga 251  Q
    |||||||||||||||||||||||||||||||||||    
T  46358223 gtcgttttcgtgaaggagtctgttttaggtgatga 46358189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 37123643 - 37123716
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttt 287  Q
    |||||||||||||||||| ||||| |||||  || ||| ||| |||||||||||||||||| ||  ||||||||    
T  37123643 gtggtcgttttcgtgaagaagtctattttatatggtgatgtgtattttggtgggtgttgtcttcaagggtgttt 37123716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 318
Target Start/End: Original strand, 7105109 - 7105209
Alignment:
Q  220 gttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggt-----gtttattttcgggtgttcc 314  Q
    |||||| ||||| ||||||||||||||| |||| ||  |||||| |||| ||||| ||||| ||||||||||||||     ||||||||| |||||||||    
T  7105109 gttttcttgaagaagtctgttttaggtggtgacatg--ttttggcgggt-ttgtcttcgggcgtgttttttagggttgggtgtttatttttgggtgttcc 7105205  T
Q  315 gcct 318  Q
    ||||    
T  7105206 gcct 7105209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 235 - 318
Target Start/End: Original strand, 12086524 - 12086607
Alignment:
Q  235 tctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcct 318  Q
    ||||||||||||| ||| ||  |||||||||||||| ||| | |||||| | ||||| | ||||||||||||  ||||||||||    
T  12086524 tctgttttaggtggtgatgtttattttggtgggtgtggtcttagggggtatcttttaagatgtttattttcgaatgttccgcct 12086607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 247
Target Start/End: Original strand, 32010025 - 32010056
Alignment:
Q  216 ggtcgttttcgtgaaggagtctgttttaggtg 247  Q
    ||||||||||||||||||||||||||||||||    
T  32010025 ggtcgttttcgtgaaggagtctgttttaggtg 32010056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 37123708 - 37123770
Alignment:
Q  291 agggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttca 354  Q
    ||||||||||||||||||||||||| |||  || || |||||||||||||||| |||| |||||    
T  37123708 agggtgtttattttcgggtgttccgactatgta-ggacgccttttgtttgtattctcagtttca 37123770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 823244 - 823184
Alignment:
Q  226 gtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 286  Q
    |||| ||||| ||||||||||| ||| || |||||||||||||| |||||||  |||||||    
T  823244 gtgatggagtttgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgtt 823184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 325
Target Start/End: Complemental strand, 25594257 - 25594217
Alignment:
Q  285 ttttttagggtgtttattttcgggtgttccgcctacatacg 325  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  25594257 ttttttatggtgtttactttcgggtgttccgcctatatacg 25594217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 25594367 - 25594296
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 286  Q
    ||||||||||| |||||||||| ||||||||||  ||| ||  ||| |||||||||||||||||  |||||||    
T  25594367 gtggtcgtttt-gtgaaggagtatgttttaggtagtgatgtttattgtggtgggtgttgtcctcatgggtgtt 25594296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 218 - 312
Target Start/End: Complemental strand, 6492946 - 6492852
Alignment:
Q  218 tcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 312  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||| ||||||    
T  6492946 tcgtttttatgaaggagtctgttttaggtggtgacgtgaattttggtggatgttgtcctcataggtgttttttatggtgtttattttcaggtgtt 6492852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 312
Target Start/End: Complemental strand, 24324610 - 24324520
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgtt 312  Q
    ||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||||  ||||| ||||||| |||||||||||||||||||    
T  24324610 ttttcgtgaaggagtctgttttaagtggtgacgtgtattttggtgagtgttgtcctcaagggtg-tttttagagtgtttattttcgggtgtt 24324520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 357
Target Start/End: Complemental strand, 16828919 - 16828778
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||| |||||| |||||| | | ||||||| |||||| ||| |||||||||| |||| || || ||||| ||| | ||| |||||||||||||||||||    
T  16828919 gtggttgttttcttgaaggggccagttttagatgatgatgtgtattttggtggttgttttcttcaggggtatttct-aggatgtttattttcgggtgttc 16828821  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccg 357  Q
    |||||| |||| ||||| |||||||||||| |||| ||||||||    
T  16828820 cgcctatatac-ggcgcattttgtttgtattctcagtttcaccg 16828778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 357
Target Start/End: Original strand, 16954751 - 16954891
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttc 313  Q
    ||||| |||||| |||||  |||||||||||||| ||||||| ||||| |||| |||| || || |||||| ||||||| |||||||||||||| |||||    
T  16954751 gtggttgttttcttgaagatgtctgttttaggtggtgacgtgtatttttgtggttgttttcttcaggggtg-tttttagcgtgtttattttcggatgttc 16954849  T
Q  314 cgcctacatacgggcgccttttgtttgtatgctcaatttcaccg 357  Q
    |||||| |||| || ||||||| ||||||| |||| ||||||||    
T  16954850 cgcctatatac-ggtgccttttatttgtat-ctcagtttcaccg 16954891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 42533055 - 42532930
Alignment:
Q  237 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttg 336  Q
    ||||||||||||||||||   |||| |||||||||||| ||  ||| |||||| ||||||||||||| | ||||||||||||| |||| |||||||||||    
T  42533055 tgttttaggtgatgacgtatttttttgtgggtgttgtcatcaagggagttttt-agggtgtttatttccaggtgttccgcctatatac-ggcgccttttg 42532958  T
Q  337 tttgtatgctcaatttcaccgatctctg 364  Q
     |||||| |||| || ||||| ||||||    
T  42532957 gttgtattctcagttccaccggtctctg 42532930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 217 - 326
Target Start/End: Original strand, 3478613 - 3478722
Alignment:
Q  217 gtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgc 316  Q
    ||||| |||||||||  |||||||| || || |||| ||  ||||||||| |||||| ||| ||  ||| ||||||||||||||||||||||||||||||    
T  3478613 gtcgtattcgtgaagacgtctgtttgagttggtgacttgttttttggtggatgttgtgctctggattgtcttttagggtgtttattttcgggtgttccgc 3478712  T
Q  317 ctacatacgg 326  Q
    ||| ||||||    
T  3478713 ctatatacgg 3478722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 221 - 364
Target Start/End: Original strand, 33719235 - 33719375
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 320  Q
    |||| ||||||||||| |||||||| | |||   | |||||||||||||||||||||  | |||||||| |||||||||| |||||  |||||||||||     
T  33719235 tttttgtgaaggagtcggttttaggcggtgataggtattttggtgggtgttgtcctcatgagtgttttt-agggtgtttactttcga-tgttccgcctat 33719332  T
Q  321 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    || | | |||| ||||||||||| |||| |||||||||||||||    
T  33719333 attcag-cgccgtttgtttgtattctcagtttcaccgatctctg 33719375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 28534340 - 28534276
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 286  Q
    ||||||||| |||||||||||||||| ||| ||  ||||||||||||||||||||| ||||||||    
T  28534340 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgtt 28534276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 326
Target Start/End: Original strand, 1321072 - 1321167
Alignment:
Q  229 aaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgg 326  Q
    |||| |||||||||||||| ||| ||| |||||||||| || |||| ||  ||  | ||||||||||||||||||||||| |||||||||| ||||||    
T  1321072 aaggggtctgttttaggtggtgatgtgtattttggtggatggtgtcttcaagg--ggtttttagggtgtttattttcgggagttccgcctatatacgg 1321167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 6716556 - 6716455
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtttttt--agggtgtttattttcgggtgt 311  Q
    ||||||||||||||||||||||  |||||||||| || | || | || ||| |||||| |||||| | |||||||||  ||||||||||||||| |||||    
T  6716556 gtggtcgttttcgtgaaggagt--gttttaggtggtgtcatgtacttgggttggtgttatcctcgtgagtgttttttttagggtgtttattttcaggtgt 6716459  T
Q  312 tccg 315  Q
    ||||    
T  6716458 tccg 6716455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 36674809 - 36674880
Alignment:
Q  292 gggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||||| | ||||||||| |||||  ||||||||||||||||   ||||||||||||||||||    
T  36674809 gggtgtttattttcggatattccgcctatatacga-cgccttttgtttgtatctccaatttcaccgatctctg 36674880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 277
Target Start/End: Original strand, 23983466 - 23983529
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 277  Q
    ||||| ||||||||||| |||||||||||||||| ||  ||  |||||||||||||||||||||    
T  23983466 gtggttgttttcgtgaatgagtctgttttaggtggtggtgtttattttggtgggtgttgtcctc 23983529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 22567941 - 22567888
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcc 275  Q
    ||||||||| |||||||||||||||| ||| ||| |||||||||| ||||||||    
T  22567941 tttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtcc 22567888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 364
Target Start/End: Complemental strand, 6726147 - 6726090
Alignment:
Q  306 gggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||| |||||| ||  |||||||||||| |||| |||||||||||||||    
T  6726147 gggtgttccgcctatatacgg-cgttttttgtttgtattctcagtttcaccgatctctg 6726090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 364
Target Start/End: Complemental strand, 28534240 - 28534175
Alignment:
Q  298 ttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||||||||||| |||| |||||||||| ||||||| ||| |  |||||| ||||||    
T  28534240 ttattttcgggtgttccgcctatatac-ggcgccttttatttgtattctctaaatcaccggtctctg 28534175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 31409807 - 31409757
Alignment:
Q  227 tgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctc 277  Q
    ||||||||||||||||| ||||||| ||  ||||||| |||||||||||||    
T  31409807 tgaaggagtctgttttatgtgatgatgtttattttggagggtgttgtcctc 31409757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 40292848 - 40292795
Alignment:
Q  233 agtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgtt 286  Q
    ||||||||||||| ||||| || |||||||||| ||| |||||||| |||||||    
T  40292848 agtctgttttaggcgatgaagttaattttggtgtgtgatgtcctcgtgggtgtt 40292795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 43235614 - 43235667
Alignment:
Q  212 cggtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtg 265  Q
    |||||| |||||||||||| |||||||||||| ||||| || || |||||||||    
T  43235614 cggtggccgttttcgtgaatgagtctgttttaagtgataacttgtattttggtg 43235667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 3867329 - 3867369
Alignment:
Q  173 ctttgggggtgagtagtgatgatgggcggtgttggatatcg 213  Q
    ||||||||||||||||||| ||||| ||||| |||||||||    
T  3867329 ctttgggggtgagtagtgacgatggacggtggtggatatcg 3867369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 221 - 364
Target Start/End: Complemental strand, 15120415 - 15120273
Alignment:
Q  221 ttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctac 320  Q
    |||| ||||| |||||||||||||||| ||| ||| |||||||||| ||||||||||  || |||||||||||||||||||| || | ||||| ||||||    
T  15120415 tttttgtgaatgagtctgttttaggtggtgatgtgtattttggtggatgttgtcctcatggatgttttttagggtgtttattgtcagatgttctgcctac 15120316  T
Q  321 atacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||| | || |||| |||||||| |||| ||| |||| ||||||    
T  15120315 atac-gtcgtctttagtttgtattctcagttttaccggtctctg 15120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 20701570 - 20701468
Alignment:
Q  259 tttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccga 358  Q
    |||| ||||||||||||||| |||||||||  || |||||||||| | ||||||||||||| |||| | |||||||||||||||| |||| |||||||||    
T  20701570 tttgatgggtgttgtcctcgtgggtgtttt--agtgtgtttatttccaggtgttccgcctatatacag-cgccttttgtttgtattctcagtttcaccga 20701474  T
Q  359 tctctg 364  Q
    ||||||    
T  20701473 tctctg 20701468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 361
Target Start/End: Original strand, 6860317 - 6860440
Alignment:
Q  237 tgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttccg--cctacatacgggcgccttt 334  Q
    ||||||||||||||||||| ||||| ||||| ||||||| |   |||||||| ||||||||||||||| ||||||||||  |||| |||| |||| ||||    
T  6860317 tgttttaggtgatgacgtgtatttttgtggg-gttgtccgcataggtgtttt-tagggtgtttatttttgggtgttccgcccctatatac-ggcgtcttt 6860413  T
Q  335 tgtttgtatgctcaatttcaccgatct 361  Q
    ||||||||| || | ||||||||||||    
T  6860414 tgtttgtattcttagtttcaccgatct 6860440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 219 - 278
Target Start/End: Complemental strand, 32935157 - 32935098
Alignment:
Q  219 cgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcg 278  Q
    ||||||||| ||||||||| ||||||||| ||  ||  ||||||||||||||||||||||    
T  32935157 cgttttcgttaaggagtctattttaggtggtggtgtttattttggtgggtgttgtcctcg 32935098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 364
Target Start/End: Complemental strand, 3880360 - 3880283
Alignment:
Q  286 tttttagggtgtttattttcgggtgttccgcctacatacgggcgccttttgtttgtatgctcaatttcaccgatctctg 364  Q
    |||||||||||||||||||  |||||||||| || |||| ||  ||||||||||||||  ||| |||||||| ||||||    
T  3880360 tttttagggtgtttattttttggtgttccgcttatatac-ggaaccttttgtttgtattttcagtttcaccggtctctg 3880283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 17278313 - 17278260
Alignment:
Q  222 tttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcc 275  Q
    ||||||||||||||||| |||||||| | | ||  |||||||||||||||||||    
T  17278313 tttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtcc 17278260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 17278215 - 17278171
Alignment:
Q  281 ggtgttttttagggtgtttattttcgggtgttccgcctacatacg 325  Q
    ||||| ||||| | ||||||||||||||||||||||||| |||||    
T  17278215 ggtgtcttttatgatgtttattttcgggtgttccgcctatatacg 17278171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 339
Target Start/End: Complemental strand, 1475 - 1347
Alignment:
Q  214 gtggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggt---gttgtcctcgggggtgttttttagggtgttta-ttttcgggt 309  Q
    ||||| ||| ||||| ||||||| |||||||||| ||||||| ||||| ||||||   ||||||||  ||||||||||||| |||||||| |||||||||    
T  1475 gtggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttttgtgggttttgttgtccttaggggtgttttttatggtgtttatttttcgggt 1376  T
Q  310 gttccgcctacatacgggcgccttttgttt 339  Q
    |||| ||||| |||| ||||||||||||||    
T  1375 gttctgcctatatac-ggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 215 - 339
Target Start/End: Original strand, 58391 - 58513
Alignment:
Q  215 tggtcgttttcgtgaaggagtctgttttaggtgatgacgtgaattttggtgggtgttgtcctcgggggtgttttttagggtgtttattttcgggtgttcc 314  Q
    |||||||||||||||||||||||||||| |||| ||| ||| | |||||  | || ||| |||  ||||| |||||||||| |||||||| ||||||||     
T  58391 tggtcgttttcgtgaaggagtctgtttttggtggtgatgtgtactttggctgatggtgttctcatgggtg-tttttagggtatttatttttgggtgttct 58489  T
Q  315 gcctacatacgggcgccttttgttt 339  Q
     |||| |||| ||||||||||||||    
T  58490 acctatatac-ggcgccttttgttt 58513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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