View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14661_high_3 (Length: 289)

Name: NF14661_high_3
Description: NF14661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14661_high_3
NF14661_high_3
[»] chr8 (15 HSPs)
chr8 (136-282)||(38613611-38613757)
chr8 (9-139)||(6311097-6311229)
chr8 (9-137)||(7290080-7290211)
chr8 (11-136)||(36979184-36979308)
chr8 (11-136)||(4760242-4760366)
chr8 (11-136)||(30655448-30655572)
chr8 (9-115)||(39784977-39785086)
chr8 (30-136)||(18853356-18853457)
chr8 (17-136)||(18870734-18870849)
chr8 (32-115)||(25328456-25328540)
chr8 (11-145)||(10689309-10689442)
chr8 (11-100)||(33037972-33038063)
chr8 (32-115)||(35745213-35745298)
chr8 (41-115)||(10684452-10684528)
chr8 (62-138)||(19752609-19752683)
[»] chr5 (21 HSPs)
chr5 (9-137)||(1457315-1457446)
chr5 (9-136)||(27444771-27444901)
chr5 (9-136)||(43592080-43592210)
chr5 (9-136)||(43598525-43598655)
chr5 (9-136)||(43604017-43604147)
chr5 (9-136)||(43609509-43609639)
chr5 (9-136)||(27449615-27449745)
chr5 (9-119)||(30631227-30631338)
chr5 (9-115)||(28807729-28807837)
chr5 (9-115)||(15044512-15044618)
chr5 (71-136)||(31180079-31180142)
chr5 (32-115)||(37556802-37556887)
chr5 (32-115)||(37561624-37561709)
chr5 (11-136)||(38191983-38192105)
chr5 (11-136)||(38219208-38219330)
chr5 (32-115)||(2785197-2785282)
chr5 (32-115)||(31397171-31397256)
chr5 (32-115)||(31402028-31402113)
chr5 (32-97)||(33791158-33791223)
chr5 (80-136)||(35387474-35387527)
chr5 (32-97)||(33768021-33768086)
[»] chr4 (11 HSPs)
chr4 (9-137)||(51520257-51520388)
chr4 (9-115)||(9224560-9224668)
chr4 (9-115)||(9229347-9229455)
chr4 (9-137)||(56146865-56146996)
chr4 (10-115)||(3813846-3813954)
chr4 (9-115)||(18855549-18855657)
chr4 (11-115)||(45347973-45348079)
chr4 (11-115)||(45357452-45357558)
chr4 (11-136)||(24741748-24741871)
chr4 (9-115)||(5732486-5732593)
chr4 (11-136)||(29760449-29760572)
[»] scaffold0135 (1 HSPs)
scaffold0135 (9-115)||(35215-35323)
[»] chr7 (17 HSPs)
chr7 (9-115)||(12396735-12396843)
chr7 (9-115)||(12406155-12406263)
chr7 (32-115)||(24024506-24024589)
chr7 (9-115)||(4866553-4866661)
chr7 (9-115)||(31109737-31109844)
chr7 (32-138)||(2057763-2057866)
chr7 (11-136)||(20357713-20357837)
chr7 (9-115)||(19992135-19992243)
chr7 (9-115)||(21812393-21812501)
chr7 (11-136)||(1533608-1533730)
chr7 (11-136)||(21645818-21645940)
chr7 (61-136)||(2479148-2479221)
chr7 (61-140)||(47263485-47263562)
chr7 (41-115)||(16879894-16879970)
chr7 (41-115)||(16884750-16884826)
chr7 (41-115)||(24261511-24261587)
chr7 (41-115)||(24266390-24266466)
[»] chr6 (15 HSPs)
chr6 (9-115)||(11856795-11856903)
chr6 (9-115)||(14737730-14737838)
chr6 (9-115)||(14742589-14742697)
chr6 (9-115)||(22010850-22010958)
chr6 (9-115)||(6438324-6438431)
chr6 (9-115)||(28184325-28184436)
chr6 (32-115)||(28155749-28155832)
chr6 (11-136)||(5674934-5675057)
chr6 (11-136)||(30125960-30126084)
chr6 (32-115)||(6005239-6005324)
chr6 (32-97)||(5343322-5343387)
chr6 (32-97)||(33330625-33330690)
chr6 (32-115)||(33336122-33336207)
chr6 (32-115)||(16838566-16838651)
chr6 (61-136)||(31936398-31936470)
[»] chr3 (14 HSPs)
chr3 (9-115)||(22173348-22173456)
chr3 (11-138)||(7167049-7167174)
chr3 (9-115)||(18656256-18656363)
chr3 (11-136)||(2671752-2671876)
chr3 (33-136)||(40372986-40373085)
chr3 (11-137)||(8477170-8477295)
chr3 (9-136)||(28504020-28504145)
chr3 (32-136)||(8739254-8739354)
chr3 (32-136)||(9091492-9091592)
chr3 (32-115)||(8512037-8512122)
chr3 (32-115)||(8516917-8517002)
chr3 (32-115)||(2677266-2677351)
chr3 (32-115)||(2673110-2673195)
chr3 (32-115)||(10207755-10207840)
[»] chr2 (10 HSPs)
chr2 (9-115)||(44312777-44312885)
chr2 (11-138)||(11099093-11099219)
chr2 (9-115)||(32246607-32246716)
chr2 (9-115)||(39812141-39812250)
chr2 (11-136)||(14291295-14291419)
chr2 (11-136)||(9296567-9296691)
chr2 (32-115)||(19344243-19344327)
chr2 (32-115)||(19349101-19349185)
chr2 (11-136)||(25403443-25403565)
chr2 (11-136)||(25398305-25398427)
[»] chr1 (10 HSPs)
chr1 (9-115)||(25445244-25445352)
chr1 (9-115)||(39445322-39445430)
chr1 (9-115)||(44024027-44024135)
chr1 (37-115)||(41386571-41386650)
chr1 (32-115)||(41398060-41398144)
chr1 (9-115)||(1055166-1055274)
chr1 (32-97)||(43988644-43988709)
chr1 (39-100)||(24787564-24787624)
chr1 (11-136)||(24202932-24203054)
chr1 (80-136)||(19359079-19359132)
[»] scaffold0464 (1 HSPs)
scaffold0464 (9-115)||(185-293)
[»] scaffold0127 (1 HSPs)
scaffold0127 (37-115)||(34132-34211)
[»] scaffold0355 (2 HSPs)
scaffold0355 (32-115)||(9818-9902)
scaffold0355 (9-115)||(40-143)
[»] scaffold0978 (1 HSPs)
scaffold0978 (13-137)||(404-528)
[»] scaffold0479 (1 HSPs)
scaffold0479 (54-115)||(13171-13233)
[»] scaffold0197 (2 HSPs)
scaffold0197 (32-115)||(19343-19428)
scaffold0197 (41-115)||(14497-14573)
[»] scaffold0028 (1 HSPs)
scaffold0028 (32-115)||(149134-149219)
[»] scaffold0259 (1 HSPs)
scaffold0259 (32-115)||(2429-2514)
[»] scaffold0188 (1 HSPs)
scaffold0188 (11-136)||(24208-24331)
[»] scaffold0087 (1 HSPs)
scaffold0087 (61-136)||(44174-44247)
[»] scaffold0009 (1 HSPs)
scaffold0009 (41-115)||(182152-182228)


Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 136 - 282
Target Start/End: Complemental strand, 38613757 - 38613611
Alignment:
Q  136 agaagcaaaattcagcagattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 235  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38613757 agaagcaaaatcgagctgattcaaaccttggcaacggtgtttgtgcaatgtatttaagaccctgcaggtgaaaacggagattacaatgagtatcaagttt 38613658  T
Q  236 aaaattactcataattttgaaacctgggaccagagatgatgatgatg 282  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  38613657 aaaattactcataattttgaaagctgggaccagagaagatgatgatg 38613611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 6311229 - 6311097
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6311229 tatacactagtctagggctgctttgttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 6311130  T
Q  107 ttggtgtgagtttcaaccggaatcacaacagaa 139  Q
    ||||||||||||||||||||| |||||||||||    
T  6311129 ttggtgtgagtttcaaccggattcacaacagaa 6311097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 7290080 - 7290211
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  7290080 tatacactagtctagggctgctttgttgttgtttgtttggagaccatttgttctcattgattaccactatctcttgctccacacatcaatgtttatttca 7290179  T
Q  107 ttggtgtgagttt-caaccggaatcacaacag 137  Q
    |||||||||||||  ||||||| |||||||||    
T  7290180 ttggtgtgagtttggaaccggattcacaacag 7290211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 36979308 - 36979184
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  36979308 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 36979212  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  36979211 ggtgtgagtttcaaccggattcacaaca 36979184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 4760242 - 4760366
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||||||||||||||||| || |||||||||||| |||||  |||||||    
T  4760242 tacactagtctagggctgtttttgttgttgttgcttggaaaccattt-tgctcattgattaccactatctctagctccacacatctttgtt--tttcatt 4760338  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    | ||||||||||||||||| ||||||||    
T  4760339 gatgtgagtttcaaccggattcacaaca 4760366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 30655572 - 30655448
Alignment:
Q  11 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   ||||||    
T  30655572 tacactagtctagggctgttttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcat 30655477  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||||||||||| ||||||||    
T  30655476 tggtgtgagtttcaaccggattcacaaca 30655448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 39784977 - 39785086
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 105  Q
    ||||||||||  |||||||| |||  |||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39784977 tatacactagcttagggctgttttgttgttattggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39785076  T
Q  106 attggtgtga 115  Q
    ||||||||||    
T  39785077 attggtgtga 39785086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 136
Target Start/End: Original strand, 18853356 - 18853457
Alignment:
Q  30 ttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaat 129  Q
    |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||||||||||||    ||| |||| ||||||||||||||||||||| |    
T  18853356 ttttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatc----tttgtttcgttggtgtgagtttcaaccggatt 18853450  T
Q  130 cacaaca 136  Q
    |||||||    
T  18853451 cacaaca 18853457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 18870734 - 18870849
Alignment:
Q  17 agtctagggctggttttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgag 116  Q
    ||||||||||   ||||||||||||||||||||||||||   ||||| |||||||| |||| ||||||||||||||| ||||||   |||||||||||||    
T  18870734 agtctagggcgttttttgttgtttgcttggaaaccatttaa-ctcatagattaccattatctcttgctccacacatctttgttt---tcattggtgtgag 18870829  T
Q  117 tttcaaccggaatcacaaca 136  Q
    ||||||||||| ||||||||    
T  18870830 tttcaaccggattcacaaca 18870849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 25328456 - 25328540
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatttcattggtgtga 115  Q
    |||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||| |||||    
T  25328456 ttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatttcattgttgtga 25328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 10689309 - 10689442
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||  |||||| || ||||||||||  ||||||||||||||| |  ||||| ||||||||||||| ||||||||||||||| |||||  |||||||    
T  10689309 tacactacactagggttgtttttgttgttgttgcttggaaaccattaga-ctcatagattaccactatctcttgctccacacatctttgtt--tttcatt 10689405  T
Q  109 ggtgtgagtttcaaccggaatcacaacagaagcaaaa 145  Q
    ||||||||||||||||| || ||||||| || |||||    
T  10689406 ggtgtgagtttcaaccgaaaacacaacacaatcaaaa 10689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 33037972 - 33038063
Alignment:
Q  11 tacactagtctagggctggtt-ttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 100  Q
    |||||||||||||||||| || ||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||||    
T  33037972 tacactagtctagggctgtttattgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgttt 33038063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 35745298 - 35745213
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  35745298 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 35745213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 10684452 - 10684528
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 10684528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 19752609 - 19752683
Alignment:
Q  62 attgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaacaga 138  Q
    |||||||||||||  |  |||||||||||||| |||||| |||||||||||||| |||  |||||| ||||||||||    
T  19752609 attgattaccacttccttttgctccacacatctttgttt-tttcattggtgtga-tttttaccggattcacaacaga 19752683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 1457315 - 1457446
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1457315 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 1457414  T
Q  107 ttggtgtgagttt-caaccggaatcacaacag 137  Q
    |||||||||||||  ||||||| |||||||||    
T  1457415 ttggtgtgagtttggaaccggattcacaacag 1457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 27444901 - 27444771
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27444901 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcattgtttatttca 27444802  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    |||||||||||||  ||||||| ||||||||    
T  27444801 ttggtgtgagtttggaaccggattcacaaca 27444771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43592210 - 43592080
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43592210 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43592111  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    ||| ||||| |||  ||||||| ||||||||    
T  43592110 ttgatgtgactttggaaccggattcacaaca 43592080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43598655 - 43598525
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43598655 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43598556  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    ||||||||| |||  ||||||| ||||||||    
T  43598555 ttggtgtgactttggaaccggattcacaaca 43598525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43604147 - 43604017
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43604147 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43604048  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    ||||||||| |||  ||||||| ||||||||    
T  43604047 ttggtgtgactttggaaccggattcacaaca 43604017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 43609639 - 43609509
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  43609639 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 43609540  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    ||||||||| |||  ||||||| ||||||||    
T  43609539 ttggtgtgactttggaaccggattcacaaca 43609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 27449745 - 27449615
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| | |  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  27449745 tatacactagtctagggctgctatgttgttgtttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcattgtttatttca 27449646  T
Q  107 ttggtgtgagttt-caaccggaatcacaaca 136  Q
    |||||||||||||  ||||||| ||||||||    
T  27449645 ttggtgtgagtttggaaccggattcacaaca 27449615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 119
Target Start/End: Complemental strand, 30631338 - 30631227
Alignment:
Q  9 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| ||||||||||  |||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  30631338 tatacactagtctagggctg-ttttgttgttgttgcttgaaaaccatttgttctcatagattaccactatctcttgctccacacatcattgtttatttca 30631240  T
Q  107 ttggtgtgagttt 119  Q
    || ||||||||||    
T  30631239 tttgtgtgagttt 30631227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 28807729 - 28807837
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  28807729 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 28807828  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  28807829 ttggtgtga 28807837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 15044618 - 15044512
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||  |||||||    
T  15044618 tatacactagtctagggctgttttgttgttgttggtttggagaccatttgttctcattgattaccactatcacttgctctacacgtcattg--tatttca 15044521  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  15044520 ttggtgtga 15044512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 31180142 - 31180079
Alignment:
Q  71 cactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||| |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||    
T  31180142 cactatctcttgctccacacatcattgtta--ttcattggtgtgagtttcaaccggattcacaaca 31180079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 37556802 - 37556887
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37556802 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37556887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 37561624 - 37561709
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  ||||||| |||||| ||||| ||||||||||||||||||||||| || ||||||| ||||||||||||    
T  37561624 ttgttgttagcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtga 37561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 38192105 - 38191983
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38192105 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38192011  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  38192010 ggtgtgagtttcaaccggattcacaaca 38191983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 38219330 - 38219208
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  38219330 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 38219236  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  38219235 ggtgtgagtttcaaccggattcacaaca 38219208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 2785282 - 2785197
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2785282 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2785197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 31397171 - 31397256
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31397171 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31397256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 31402028 - 31402113
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  31402028 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 31402113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 33791223 - 33791158
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 97  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33791223 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33791158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 35387527 - 35387474
Alignment:
Q  80 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  35387527 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 35387474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 33768086 - 33768021
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 97  Q
    |||||||| |||||||   ||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33768086 ttgttgttagcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattg 33768021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 3e-45; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 9 - 137
Target Start/End: Complemental strand, 51520388 - 51520257
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  51520388 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 51520289  T
Q  107 ttggtgtgagttt-caaccggaatcacaacag 137  Q
    |||||||||||||  ||||||| |||||||||    
T  51520288 ttggtgtgagtttggaaccggattcacaacag 51520257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 9224560 - 9224668
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9224560 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9224659  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  9224660 ttggtgtga 9224668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 9229347 - 9229455
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9229347 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 9229446  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  9229447 ttggtgtga 9229455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 56146865 - 56146996
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  56146865 tatacactagtctagggctgctttgttgttgtttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcattgtttatttca 56146964  T
Q  107 ttggtgtgagttt-caaccggaatcacaacag 137  Q
    ||||||||| |||  ||||||| |||||||||    
T  56146965 ttggtgtgaatttggaaccggattcacaacag 56146996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 115
Target Start/End: Complemental strand, 3813954 - 3813846
Alignment:
Q  10 atacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||||||| ||| |||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3813954 atacactagtctaggactgttttgttgttgtttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatttca 3813855  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  3813854 ttggtgtga 3813846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 18855657 - 18855549
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  18855657 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttca 18855558  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  18855557 ttggtgtga 18855549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 45347973 - 45348079
Alignment:
Q  11 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45347973 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45348072  T
Q  109 ggtgtga 115  Q
    |||||||    
T  45348073 ggtgtga 45348079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 45357452 - 45357558
Alignment:
Q  11 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||| ||| |||  ||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  45357452 tacactagtctaggactgttttgttgttgttagcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcattgtttatttcatt 45357551  T
Q  109 ggtgtga 115  Q
    |||||||    
T  45357552 ggtgtga 45357558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 24741871 - 24741748
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| ||||   |||||||    
T  24741871 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgt---tttcatt 24741776  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  24741775 ggtgtgagtttcaaccggattcacaaca 24741748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 5732593 - 5732486
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  5732593 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 5732495  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  5732494 ttggtgtga 5732486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 29760572 - 29760449
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    ||||||||||||||| || ||||||||||  ||||||||||||||||  | | |||||||||||||||| ||||||||||||||| ||||||  ||||||    
T  29760572 tacactagtctagggttg-ttttgttgttgttgcttggaaaccattttgttt-attgattaccactatctcttgctccacacatctttgttt--ttcatt 29760477  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  29760476 ggtgtgagtttcaaccggattcacaaca 29760449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 35215 - 35323
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  35215 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 35314  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  35315 ttggtgtga 35323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 12396843 - 12396735
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12396843 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12396744  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  12396743 ttggtgtga 12396735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 12406263 - 12406155
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12406263 tatacactagtctagggctgctttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 12406164  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  12406163 ttggtgtga 12406155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 24024506 - 24024589
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 115  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24024506 ttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 24024589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 4866661 - 4866553
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||| ||| |||  ||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4866661 tatacactagtctaggactgttttgttgttgtttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcattgtttatttca 4866562  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  4866561 ttggtgtga 4866553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 31109737 - 31109844
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    ||||||||||| |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31109737 tatacactagt-tagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcattgtttatttca 31109835  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  31109836 ttggtgtga 31109844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 2057866 - 2057763
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 131  Q
    |||||||||||||||||||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||| |||    
T  2057866 ttgttgtttgcttggaaaccatttga-ctcatagattaccactatctcttgctccacacatctttgttt--ttcattggtgtgagtttcaaccggattca 2057770  T
Q  132 caacaga 138  Q
    |||||||    
T  2057769 caacaga 2057763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 20357713 - 20357837
Alignment:
Q  11 tacactagtctagggctggttttgttgttt---gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||||||||||||||||| ||||||||||    ||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||||   ||||    
T  20357713 tacactagtctagggctgtttttgttgttgttagcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgttt---tcat 20357808  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||||||||||| ||||||||    
T  20357809 tggtgtgagtttcaaccggattcacaaca 20357837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 19992243 - 19992135
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || |||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||||    
T  19992243 tatacactagcttagggctgtttgttgttgtaagcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatttca 19992144  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  19992143 ttggtgtga 19992135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 21812393 - 21812501
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || |||||||| |||||||| ||||||| |||||| ||||||||||||| ||||||||||||||| || ||||||||||    
T  21812393 tatacactagcttagggctgtttgttgttgttagcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttca 21812492  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  21812493 ttggtgtga 21812501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 1533608 - 1533730
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||| || |||||||||||||||||  |||||||||||  ||| ||||||||||||||||||||   |||||||||||||| ||||   |||||||    
T  1533608 tacactagactggggctggttttgttgttgttgcttggaaac--ttttttctcattgattaccactatattttgctccacacatctttgt---tttcatt 1533702  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||| ||||||| ||||||||    
T  1533703 ggtgtgagttttaaccggattcacaaca 1533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 21645940 - 21645818
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||| ||||||||| ||||||||||  |||||||| ||  |||   ||||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  21645940 tacactagactagggctgtttttgttgttgttgcttggagacacttta--ctcatagattaccactcccttttgctccacacatctttgttta---catt 21645846  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||| ||||||| ||||||||    
T  21645845 ggtgtgagttttaaccggattcacaaca 21645818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 2479221 - 2479148
Alignment:
Q  61 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 136  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  2479221 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 2479148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 47263562 - 47263485
Alignment:
Q  61 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaacagaag 140  Q
    |||||||||||||| ||  ||||||||| |||| ||||||  ||||||||||||| | |||||||||| ||||||||||||    
T  47263562 cattgattaccact-tcctttgctccacgcatctttgttt--ttcattggtgtgattatcaaccggaactcacaacagaag 47263485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 16879970 - 16879894
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16879894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 16884826 - 16884750
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 16884750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 24261511 - 24261587
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24261587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 24266390 - 24266466
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 24266466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 11856903 - 11856795
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11856903 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 11856804  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  11856803 ttggtgtga 11856795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 14737730 - 14737838
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14737730 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14737829  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  14737830 ttggtgtga 14737838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 14742589 - 14742697
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14742589 tatacactagtctagggctgttttgttgttgtatgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattgtttatttca 14742688  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  14742689 ttggtgtga 14742697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 22010850 - 22010958
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22010850 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 22010949  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  22010950 ttggtgtga 22010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 6438431 - 6438324
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    ||||||||||  |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6438431 tatacactagcttagggctgtttgttgttgtttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcattgtttatttcat 6438332  T
Q  108 tggtgtga 115  Q
    ||||||||    
T  6438331 tggtgtga 6438324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 28184436 - 28184325
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccattt--gttctcattgattaccactatcacttgctccacacatcatt-gtttatt 103  Q
    |||||||||||||||||||| |||  ||||||||||||||| |||||||  |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  28184436 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttttgttctcattgattatcactatcacttgctccacacatcattggtttatt 28184337  T
Q  104 tcattggtgtga 115  Q
    ||||||||||||    
T  28184336 tcattggtgtga 28184325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 28155749 - 28155832
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtga 115  Q
    |||||||| ||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  28155749 ttgttgttagcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcattgtttattgcattggtgtga 28155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 5674934 - 5675057
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||| ||||||||||||||||||||  ||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||||   |||||    
T  5674934 tacactagactagggctggttttgttgttgttgcttgggaaactttt-tactctttgattaccactatcttttgctccacacatctttgttt---tcatt 5675029  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||| ||||||| ||||||||    
T  5675030 ggtgtgagttttaaccggattcacaaca 5675057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 30125960 - 30126084
Alignment:
Q  11 tacactagtctagggctggttttgttgt---ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||||||||||||||||| |||||||||   | ||||||| ||||||||  ||||| ||||| ||||| | ||||||||||||||| ||||||   ||||    
T  30125960 tacactagtctagggctgtttttgttgtagttagcttggagaccatttgg-ctcatagattatcactacctcttgctccacacatctttgttt---tcat 30126055  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||| ||||||||||| ||||||||    
T  30126056 tggtgtgattttcaaccggattcacaaca 30126084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 6005324 - 6005239
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6005324 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 6005239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 5343387 - 5343322
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 97  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  5343387 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 5343322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 33330625 - 33330690
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 97  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||||    
T  33330625 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 33330690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 33336122 - 33336207
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| | |||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  33336122 ttgttgttagtttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 33336207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 16838651 - 16838566
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| ||||| |  |||||||  ||||| ||||| | ||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16838651 ttgttgttagcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtga 16838566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 31936470 - 31936398
Alignment:
Q  61 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||  |  |||||||||||||| |||||  |||||||||||||| ||| ||||||| ||||||||    
T  31936470 cattgattaccacttccttttgctccacacatctttgtt--tttcattggtgtga-ttttaaccggattcacaaca 31936398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 4e-41; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 22173348 - 22173456
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  22173348 tatacactagtctagggctgttttgttgttgtttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattgtttatttca 22173447  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  22173448 ttggtgtga 22173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 7167174 - 7167049
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||||  ||||||    
T  7167174 tacactagtctagggctg-ttttgttgttgttgcttggaaaccattt-tgctcatagattaccactatctcttgctccacacatctttgttt--ttcatt 7167079  T
Q  109 ggtgtgagtttcaaccggaatcacaacaga 138  Q
    ||||||||||||||||||| ||||||||||    
T  7167078 ggtgtgagtttcaaccggattcacaacaga 7167049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 18656363 - 18656256
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||    
T  18656363 tatacactagcttagggctgttttgttgttgttagcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattgtat-tttca 18656265  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  18656264 ttggtgtga 18656256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 2671752 - 2671876
Alignment:
Q  11 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||||||| ||||||||| ||||||||||   |||||||| ||||||||  ||||| ||||||||||||| ||||||||||||||| ||||   ||||||    
T  2671752 tacactagactagggctgtttttgttgttgtttgcttggagaccatttgg-ctcatagattaccactatctcttgctccacacatctttgt---tttcat 2671847  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||| ||||||| ||||||||    
T  2671848 tggtgtgagttttaaccggattcacaaca 2671876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 40372986 - 40373085
Alignment:
Q  33 tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcac 132  Q
    ||||||||||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   |||||||||||||||||| ||||||| ||||    
T  40372986 tgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcattggtgtgagttttaaccggattcac 40373081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 137
Target Start/End: Complemental strand, 8477295 - 8477170
Alignment:
Q  11 tacactagtctagggctggttttgttgt--ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    ||||||||||||||||||||||||||||  |||||||| || | ||| | ||| |||||||||||||||  |||||||||||||| ||||   |||||||    
T  8477295 tacactagtctagggctggttttgttgttgttgcttgggaaac-tttttactctttgattaccactatcttttgctccacacatctttgt---tttcatt 8477200  T
Q  109 ggtgtgagtttca-accggaatcacaacag 137  Q
    ||||||||||| | |||||| |||||||||    
T  8477199 ggtgtgagttttataccggattcacaacag 8477170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 28504020 - 28504145
Alignment:
Q  9 tatacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||||||| ||||||| ||||||||||  |||||||||||||||| ||||||| ||||| ||||| |  ||||||||||||||||||||   ||||    
T  28504020 tatacactagtcaagggctg-ttttgttgttgttgcttggaaaccattt-ttctcatagattatcactaccttttgctccacacatcattgtt--attca 28504115  T
Q  107 ttggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||   |||||| ||||||||    
T  28504116 ttggtgtgagttaagaccggattcacaaca 28504145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 8739254 - 8739354
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 131  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  8739254 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 8739349  T
Q  132 caaca 136  Q
    |||||    
T  8739350 caaca 8739354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 9091492 - 9091592
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatca 131  Q
    ||||| |||||||||||||||||||  ||||| ||||||||||||  ||||||||||||||| ||||   |||||||||||||||| ||||||| | |||    
T  9091492 ttgttatttgcttggaaaccatttga-ctcatagattaccactatttcttgctccacacatctttgt---tttcattggtgtgagtctcaaccgaattca 9091587  T
Q  132 caaca 136  Q
    |||||    
T  9091588 caaca 9091592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 8512122 - 8512037
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8512122 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8512037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 8517002 - 8516917
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||| ||||||| |||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  8517002 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 8516917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 2677266 - 2677351
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  ||||||| |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2677266 ttgttgttagcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2677351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 2673110 - 2673195
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  ||||||  |||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  2673110 ttgttgttagcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 2673195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 10207840 - 10207755
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  10207840 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 10207755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 44312777 - 44312885
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 106  Q
    |||||||| ||||||||| | |||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312777 tatacacttgtctagggcggctttgttgttgtttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttca 44312876  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  44312877 ttggtgtga 44312885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 11099093 - 11099219
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||||  | |||||||||||||||||| ||||||||||||||| |||||  |||||||    
T  11099093 tacactagtctagggctgtttttgttgttgttgcttggaaaccattttgt-tcattgattaccactatctcttgctccacacatctttgtt--tttcatt 11099189  T
Q  109 ggtgtgagtttcaaccggaatcacaacaga 138  Q
    ||||||||||||||||||| ||||||||||    
T  11099190 ggtgtgagtttcaaccggattcacaacaga 11099219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 32246716 - 32246607
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 105  Q
    |||||||||||||||| ||| |||  ||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  32246716 tatacactagtctaggactgttttgttgttgttagcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatttc 32246617  T
Q  106 attggtgtga 115  Q
    ||||||||||    
T  32246616 attggtgtga 32246607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 39812141 - 39812250
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 105  Q
    ||||||||||  |||||||| |||  ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39812141 tatacactagcttagggctgttttgttgttgttggcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatttc 39812240  T
Q  106 attggtgtga 115  Q
    ||||||||||    
T  39812241 attggtgtga 39812250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 14291419 - 14291295
Alignment:
Q  11 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||| ||||||||||||| ||||||||||   |||||||||||||||| | | ||||||||||||||||| ||||||||||||| | ||||   ||||||    
T  14291419 tacattagtctagggctgtttttgttgttgtttgcttggaaaccattt-tgcccattgattaccactatctcttgctccacacacctttgt---tttcat 14291324  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||| ||||||| ||||||||    
T  14291323 tggtgtgagttttaaccggattcacaaca 14291295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 9296567 - 9296691
Alignment:
Q  11 tacactagtctagggctggttttgttgtt---tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    |||||||| ||||||||| ||||||||||   |||||||||||||||| | ||||| ||||||||||| |  |||||||||||||| ||||||   ||||    
T  9296567 tacactagactagggctgtttttgttgttgtttgcttggaaaccattt-tgctcatagattaccactaccttttgctccacacatctttgttt---tcat 9296662  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||| ||||||| ||||||||    
T  9296663 tggtgtgagttttaaccggattcacaaca 9296691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 19344327 - 19344243
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19344327 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19344243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 19349185 - 19349101
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    |||||||| |||||||  ||||||| |||||| ||||||||||||| ||||||||||||||| || |||||||||||||||||||    
T  19349185 ttgttgttagcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatttcattggtgtga 19349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 25403565 - 25403443
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25403565 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25403471  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||||||||||| ||||||||    
T  25403470 ggtgtgagtttcaaccggattcacaaca 25403443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 25398427 - 25398305
Alignment:
Q  11 tacactagtctagggctggttttgttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    |||||||||||||||||| ||||||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   ||||    
T  25398427 tacactagtctagggctgtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---catt 25398333  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||||||| || ||||||||    
T  25398332 ggtgtgagtttcaaccagattcacaaca 25398305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 25445244 - 25445352
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||    
T  25445244 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatttca 25445343  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  25445344 ttggtgtga 25445352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 39445430 - 39445322
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  39445430 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 39445331  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  39445330 ttggtgtga 39445322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 44024027 - 44024135
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||    
T  44024027 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatttca 44024126  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  44024127 ttggtgtga 44024135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 41386650 - 41386571
Alignment:
Q  37 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  41386650 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 41386571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 41398144 - 41398060
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  41398144 ttgttgtttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatttcattggtgtga 41398060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 1055166 - 1055274
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || |||||||  ||||||||  ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||    
T  1055166 tatacactagcttagggctgtttgttgttgtaagcttggaagacatttgttcacattgattatcactatcacttgctccacacatcattggtttatttca 1055265  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  1055266 ttggtgtga 1055274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 43988644 - 43988709
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg 97  Q
    |||||||| |||||||| ||||||| |||||| ||||| | |||||||||||||||||||||||||    
T  43988644 ttgttgttagcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattg 43988709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 24787564 - 24787624
Alignment:
Q  39 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgttt 100  Q
    ||||||||||||||||| | |||||| |||||||||||| ||||||||||||||| ||||||    
T  24787564 ttgcttggaaaccattt-tgctcatttattaccactatctcttgctccacacatctttgttt 24787624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 24202932 - 24203054
Alignment:
Q  11 tacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcatt 108  Q
    ||||||||| |||||||| |||  ||||||||||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| ||||||   |||||    
T  24202932 tacactagtttagggctgttttgttgttgtttgcttggagacacttta--cacatagattaccactcccttttgctccacacatctttgttt---tcatt 24203026  T
Q  109 ggtgtgagtttcaaccggaatcacaaca 136  Q
    ||||||||||| ||||||| ||||||||    
T  24203027 ggtgtgagttttaaccggattcacaaca 24203054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 19359079 - 19359132
Alignment:
Q  80 ttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||||| |||||||   ||||||||||||||| ||||||| ||||||||    
T  19359079 ttgctccacacatctttgttta---cattggtgtgagttttaaccggattcacaaca 19359132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 115
Target Start/End: Complemental strand, 293 - 185
Alignment:
Q  9 tatacactagtctagggctggtt-ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttca 106  Q
    ||||||||||  |||||||| || ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||| || ||||||||||    
T  293 tatacactagcttagggctgtttgttgttgtttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatttca 194  T
Q  107 ttggtgtga 115  Q
    |||||||||    
T  193 ttggtgtga 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 115
Target Start/End: Original strand, 34132 - 34211
Alignment:
Q  37 gtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  34132 gtttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 34211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 9818 - 9902
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  9818 ttgttgtttggttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatttcattggtgtga 9902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 40 - 143
Alignment:
Q  9 tatacactagtctagggctggttt--tgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttc 105  Q
    ||||||||||  |||||||| |||  |||||||| |||||| |||||||| ||||||||||||      ||||||||||||||||||||| ||||||||     
T  40 tatacactagcttagggctgttttgttgttgtttacttggagaccatttgctctcattgatta------tcacttgctccacacatcattggtttattta 133  T
Q  106 attggtgtga 115  Q
    ||||||||||    
T  134 attggtgtga 143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 404 - 528
Alignment:
Q  13 cactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcattg 109  Q
    ||||||| |||||||| |||| ||||||  |||||||||||||||| | ||||| ||||||||||||| ||||||||||||||| ||||   ||||||||    
T  404 cactagtttagggctgttttttgttgttgttgcttggaaaccatttttgctcatagattaccactatctcttgctccacacatctttgt---tttcattg 500  T
Q  110 gtgtgagtttcaaccggaatcacaacag 137  Q
    |||||||||| ||  ||| |||||||||    
T  501 gtgtgagttttaaatggattcacaacag 528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 13233 - 13171
Alignment:
Q  54 ttgttctcattgattaccactatcacttgctccacacatcatt-gtttatttcattggtgtga 115  Q
    |||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||    
T  13233 ttgttctcattgattatcactatcacttgctccacatatctttggtttatttcattggtgtga 13171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 19343 - 19428
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  19343 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 19428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 14497 - 14573
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 14573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 149134 - 149219
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| | ||||||||||||||||||||||||| |||||| ||||||||||||    
T  149134 ttgttgttagcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtga 149219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 2429 - 2514
Alignment:
Q  32 ttgttgtttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||| |||||||  |||||||  ||||| ||||| |  |||||||||||||||||||||||| |||||| ||||||||||||    
T  2429 ttgttgttagcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtga 2514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 24208 - 24331
Alignment:
Q  11 tacactagtctagggctggtttt-gttgtt--tgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattgtttatttcat 107  Q
    ||||||||||||||||||||||| ||||||  |||||||| ||  |||   | ||| ||||||||||  |  |||||||||||||| |||||||   |||    
T  24208 tacactagtctagggctggtttttgttgttgttgcttggagacacttta--cacatagattaccacttccttttgctccacacatctttgttta---cat 24302  T
Q  108 tggtgtgagtttcaaccggaatcacaaca 136  Q
    |||||||||||| ||||||| ||||||||    
T  24303 tggtgtgagttttaaccggattcacaaca 24331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 44174 - 44247
Alignment:
Q  61 cattgattaccactatcacttgctccacacatcattgtttatttcattggtgtgagtttcaaccggaa-tcacaaca 136  Q
    |||||||||||||| ||  |||||||||||||| ||||||  ||||||||||||| | |||||||||| ||||||||    
T  44174 cattgattaccact-tcctttgctccacacatctttgttt--ttcattggtgtgattatcaaccggaactcacaaca 44247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 182152 - 182228
Alignment:
Q  41 gcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcattg-tttatt-tcattggtgtga 115  Q
    |||||||  |||||||  ||||| ||||||| ||||| ||||||||||||||| ||| |||||| ||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtga 182228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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