View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14661_high_6 (Length: 206)
Name: NF14661_high_6
Description: NF14661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14661_high_6 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2349495 - 2349700
Alignment:
| Q |
1 |
ccgtcaaactatatgttggtggatttgaagcaatggtttacacacctaacatttaatatggttcttcgaatggctgttgggaagagatatttcggtgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349495 |
ccgtcaaactatatgttggtggatttgaagcaatggtttacacacctaacatttaatatggttcttcgaatggctgttgggaagagatatttcggtgcaa |
2349594 |
T |
|
| Q |
101 |
aaactattgttgaagaagctcaaagaagtgtgaaagctttgaaggagattatgcgtttgttcggggtaatcacggtgggagatgttattccttgtttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2349595 |
aaactattgttgaagaagctcaaagaagtgtgaaagctttgaaggagattatgcgtttgttcggggtaatcacggtgggagatgttattccttgtttaaa |
2349694 |
T |
|
| Q |
201 |
atggtt |
206 |
Q |
| |
|
|||||| |
|
|
| T |
2349695 |
atggtt |
2349700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 194
Target Start/End: Original strand, 2306155 - 2306324
Alignment:
| Q |
31 |
caatggtttacacacctaacatttaatatggttcttcgaatggctgttgggaagagatatttcggtgcaaaaactattgttgaagaag------ctcaaa |
124 |
Q |
| |
|
|||||||||||||| ||||||| || |||||||||||||||| ||||||||| |||||||| ||| || ||||| | || |||| || ||| |
|
|
| T |
2306155 |
caatggtttacacatttaacattcaacatggttcttcgaatggttgttgggaaaagatattttggtctaataactagttcggaggaagacgaatctaaaa |
2306254 |
T |
|
| Q |
125 |
gaagtgtgaaagctttgaaggagattatgcgtttgttcggggtaatcacggtgggagatgttattccttg |
194 |
Q |
| |
|
| ||||||||||||||||| | | |||| |||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
2306255 |
tatgtgtgaaagctttgaagaaattgatgcatttgtttggggtaattacggtgggagatgttattccttg |
2306324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 2338476 - 2338537
Alignment:
| Q |
31 |
caatggtttacacacctaacatttaatatggttcttcgaatggctgttgggaagagatattt |
92 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2338476 |
caatggtttacacatttaacgtttaacatggttcttcgaatggttgttgggaaaagatattt |
2338537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 5805845 - 5805637
Alignment:
| Q |
4 |
tcaaactatatgttggtggatttgaagcaatggtttacacacctaacatttaatatggttcttcgaatggctgttgggaagagatatttcggtgcaaaaa |
103 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||| ||| || ||| |||||||||||||||||| |||||||||| |
|
|
| T |
5805845 |
tcaaactatgtgttggtggacttgaagcaatggtttacacacgtaacatttaatatggtccttagattggttgttgggaagagatattttggtgcaaaaa |
5805746 |
T |
|
| Q |
104 |
ctattgtt------gaagaagctcaaagaagtgtgaaagctttgaaggagattatgcgtttgttcggggtaatcacggtgggagatgttattccttgttt |
197 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||||| ||||| |||| ||||| ||| ||||||| ||||||||||||||||| ||||| |
|
|
| T |
5805745 |
ctattgttgatgaagaaaaagctcaaagaactgtgaaagctttgaatgagatgatgcatttgtcagggataatcactgtgggagatgttattccatgttt |
5805646 |
T |
|
| Q |
198 |
aaaatggtt |
206 |
Q |
| |
|
|||||||| |
|
|
| T |
5805645 |
caaatggtt |
5805637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University