View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14661_low_6 (Length: 259)

Name: NF14661_low_6
Description: NF14661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14661_low_6
NF14661_low_6
[»] chr8 (1 HSPs)
chr8 (1-76)||(31879287-31879362)
[»] chr7 (2 HSPs)
chr7 (197-255)||(43702857-43702915)
chr7 (90-132)||(43702750-43702792)
[»] chr2 (1 HSPs)
chr2 (90-132)||(6204535-6204577)
[»] chr5 (1 HSPs)
chr5 (90-130)||(29984826-29984866)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 31879287 - 31879362
Alignment:
Q  1 aaatgtgagaatgtttgtaattgatttaatttttagtgacaaaatttaaagaatttatctaaaccctccagtaaag 76  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31879287 aaatgtgagaatgtttgtaattggtttaatttttagtgacaaaatttaaagaatttatctaaaccctcctgtaaag 31879362  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 43702857 - 43702915
Alignment:
Q  197 cacacaccctctgctcttcctcctccaatgagacacagcacgcactcctcctgcatctc 255  Q
    ||||||||||||||||||||||||||||| ||||||| || | ||||||||| ||||||    
T  43702857 cacacaccctctgctcttcctcctccaataagacacatcatgtactcctccttcatctc 43702915  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 43702750 - 43702792
Alignment:
Q  90 ctccatttatatcaattcacttcatagatgtttcacatgtggc 132  Q
    |||||||||||  |||||||||||||||||||||| |||||||    
T  43702750 ctccatttatacaaattcacttcatagatgtttcatatgtggc 43702792  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 6204535 - 6204577
Alignment:
Q  90 ctccatttatatcaattcacttcatagatgtttcacatgtggc 132  Q
    ||||||||||| |||||||||||| |||||||| |||||||||    
T  6204535 ctccatttataccaattcacttcacagatgtttaacatgtggc 6204577  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 29984866 - 29984826
Alignment:
Q  90 ctccatttatatcaattcacttcatagatgtttcacatgtg 130  Q
    ||||||||||| ||||||||||||| ||||||| |||||||    
T  29984866 ctccatttataccaattcacttcatggatgtttgacatgtg 29984826  T

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