View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14662_low_4 (Length: 383)

Name: NF14662_low_4
Description: NF14662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14662_low_4
NF14662_low_4
[»] chr5 (3 HSPs)
chr5 (24-115)||(16547283-16547374)
chr5 (294-373)||(23556019-23556098)
chr5 (298-373)||(9842555-9842630)
[»] chr4 (1 HSPs)
chr4 (294-373)||(54079083-54079162)
[»] chr1 (3 HSPs)
chr1 (294-373)||(41697788-41697867)
chr1 (294-373)||(41703382-41703461)
chr1 (294-373)||(8017230-8017309)
[»] chr7 (1 HSPs)
chr7 (294-373)||(42434884-42434963)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 16547283 - 16547374
Alignment:
Q  24 gacatggcgatcatcatggcggaggagggcatggaggcggcgaaggagatggtggagagtccgtccaaagattatagttactatatattctg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  16547283 gacatggcgatcatcatggcggaggagggcatggaggcggcgaaggagatggtggagagtccgtcctaagatcatagttaccatatattctg 16547374  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 23556019 - 23556098
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23556019 gtgctatatggtgcgacaagcaccacacgaattgcacgagagaatggctgaccccaccatccaatttcctttttatatta 23556098  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 373
Target Start/End: Complemental strand, 9842630 - 9842555
Alignment:
Q  298 tatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||| ||||||  |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9842630 tatatggtgcaacaagcaccacatgaattgcacgagagaatggctgaccccaccatccaatttcctttttatatta 9842555  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 54079162 - 54079083
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54079162 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 54079083  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 41697788 - 41697867
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41697788 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 41697867  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 41703382 - 41703461
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703382 gtgctatatggtgcgacaagcaccacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 41703461  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 294 - 373
Target Start/End: Original strand, 8017230 - 8017309
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||| |||||||||||| |||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  8017230 gtgcaatatggtgcgacgagcaccacacgaattgcacgagagaatggcggaccccaccatccaatttcctttttatatta 8017309  T

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Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 42434963 - 42434884
Alignment:
Q  294 gtgctatatggtgcgacaagctgcacacgaattacacgagagaatggctgaccccaccatccaatttcctttttatatta 373  Q
    |||||||||| ||||||||||  | |||||||| |||||||||||| ||||||  || ||||||||||||||||||||||    
T  42434963 gtgctatatgatgcgacaagcaccgcacgaattgcacgagagaatgactgaccaaactatccaatttcctttttatatta 42434884  T

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