View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14662_low_6 (Length: 352)
Name: NF14662_low_6
Description: NF14662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14662_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 346
Target Start/End: Original strand, 25421637 - 25421971
Alignment:
| Q |
13 |
atcttaaaaagggtcatgtgtatttaaccagctttgttaaattgttcttgtcattgtagatttcaggtttacaaatatcttaattattgatttcaaaaga |
112 |
Q |
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| T |
25421637 |
atcttaaaaagggtcatgtgtatttaaccagctttgttaaattgttcttgtcattgtagatttcaggtttacaaatatcttaattattgatttcaaaaga |
25421736 |
T |
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| Q |
113 |
aggaaatcctacaaattgctttgaaacctttcttgattagtaaggtattagagctgacattctaaatg-tttgtaatgagcctttatgtggagcttataa |
211 |
Q |
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| T |
25421737 |
aggaaatcctacaaattgctttgaaacctttcttgattagtaaggtattagagctggcattctaaatgttttgcaatgagcctttatatggagcttataa |
25421836 |
T |
|
| Q |
212 |
tacagaaattccattttatacattattactcaacatgttccattaaagtgtattccaggataattgcttaaaatgactattttgccctccagttttgcct |
311 |
Q |
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| T |
25421837 |
tacagaaattccattttatacattattactcaacatgttccattaaagtgtattccaggataattgcttaaaatgactattttgccctccatttttgcct |
25421936 |
T |
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| Q |
312 |
ctcattccaatagcatatatcacacacaatattct |
346 |
Q |
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| T |
25421937 |
ctcattccaatagcatatatcacacacaatattct |
25421971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 137 - 276
Target Start/End: Original strand, 1719551 - 1719695
Alignment:
| Q |
137 |
aacctttcttgattagtaaggtattagagctgacattctaaatgttt-gtaatgagcctttatgtggagctt----ataatacagaaattccattttata |
231 |
Q |
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| T |
1719551 |
aacctttcttgattagtaagatattagagctgacattctaaatgtttagtaatgagcctttatatggagcttcttactatgacagaaattccattttata |
1719650 |
T |
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| Q |
232 |
cattattactcaacatgttccattaaagtgtattccaggataatt |
276 |
Q |
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| T |
1719651 |
cattattacgctacatgttccattaaagtgtattccaagataatt |
1719695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 45 - 138
Target Start/End: Original strand, 1719384 - 1719476
Alignment:
| Q |
45 |
tttgttaaattgttcttgtcattgtagatttcaggtttacaaatatcttaattattgatttcaaaagaaggaaatcctacaaattgctttgaaa |
138 |
Q |
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| T |
1719384 |
tttgttcagttgtacttgtcattgtagatatcaggtttacgattatcttgat-attgatttcaaaagaatgaaatcctacaaattgctttgaaa |
1719476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 35436624 - 35436711
Alignment:
| Q |
51 |
aaattgttcttgtcatt-gtagatttcaggtttacaaatatcttaattattgatttcaaaagaaggaaatcctacaaattgctttgaaa |
138 |
Q |
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| T |
35436624 |
aaattgtacttgtcatttgtagatatcaggtttacagctatcctgat-attgatttcaaaagaatgaaatcctacaaattgatttgaaa |
35436711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 134
Target Start/End: Original strand, 35423320 - 35423392
Alignment:
| Q |
61 |
tgtcattgtagatttcaggtttacaaatatcttaattattgatttcaaaagaaggaaatcctacaaattgcttt |
134 |
Q |
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| T |
35423320 |
tgtcattgtagatatcaggtttacaattatcctca-tattgatttcaaaataatgaaatcctaataattgcttt |
35423392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 275
Target Start/End: Original strand, 32304125 - 32304182
Alignment:
| Q |
218 |
aattccattttatacattattactcaacatgttccattaaagtgtattccaggataat |
275 |
Q |
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| T |
32304125 |
aattccattttaaacatgattactctacgtgttccattaaagtgtattctagaataat |
32304182 |
T |
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