View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14662_low_7 (Length: 332)
Name: NF14662_low_7
Description: NF14662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14662_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 1979047 - 1978748
Alignment:
| Q |
1 |
tactgcccatgtgataacaattcaacaaaaggtggcttcatacgttcacataaatgaacctccatgccctaaaagaaataaccatgagtaacacattcct |
100 |
Q |
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| T |
1979047 |
tactgcccatgtgaaaacaattcaacaaaaggtggcttcatacgttcacataaatgaacctccatgccctaaaagaaataaccatgagtaacacattcct |
1978948 |
T |
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| Q |
101 |
aattgtttattgtaaattgatctatcaaagtcataactagtgcaattgtgcatattataagtaccgaacaaaacatacatctttcatcaaaattgccaat |
200 |
Q |
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| T |
1978947 |
aattgtttattgtaaattgatctatcaaagt------tagtgcaattgtgcatattataagtaccgaacaaaacatacatctt--------attgccaat |
1978862 |
T |
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| Q |
201 |
ataatttcttcggtgtaagagttatnnnnnnntatgtcttctctaaggtccactatgtcat---actctaaatcaacctttgatgaacttcaatgggtga |
297 |
Q |
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| T |
1978861 |
ataatttcttcggtgtaagagttat-aaaaaatatgtcttctctaaggtccactatgtcatataattctaaatcaacctttgatgaacttcaatgggtga |
1978763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 68 - 314
Target Start/End: Original strand, 1947409 - 1947660
Alignment:
| Q |
68 |
cctaaaagaaataaccatgagtaacacattcctaattgtttattgtaaattgatctatcaaagtcataactagtgcaattgtgcatattataagtaccga |
167 |
Q |
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| T |
1947409 |
cctaaaagaaataaccatgagtaacacattcctaattgtttattgtaaattgatctaacaaagtcatagctagtgcaattgtgcaagttataagtaacga |
1947508 |
T |
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| Q |
168 |
acaaaacatacatctttcatcaaaattgccaatataatttcttcggtgtaagagttat--nnnnnnntatgtcttctctaaggtccactatgtcat---a |
262 |
Q |
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| T |
1947509 |
acaaaccatacatctttcatcaaaattgccaatataaattcttcagtgtaagagttataaaaaaaaaaatgtcttctctaaggtccactatgtcatataa |
1947608 |
T |
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| Q |
263 |
ctctaaatcaacctttgatgaacttcaatgggtgattcatattcgaaaaacc |
314 |
Q |
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| T |
1947609 |
ttctaaatcaacctttgatgaacttcgatgggtgattcatgttagaaaaacc |
1947660 |
T |
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