View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14662_low_8 (Length: 292)

Name: NF14662_low_8
Description: NF14662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14662_low_8
NF14662_low_8
[»] chr2 (6 HSPs)
chr2 (40-276)||(17650887-17651123)
chr2 (53-276)||(17661092-17661317)
chr2 (47-276)||(17698921-17699152)
chr2 (53-276)||(17617271-17617495)
chr2 (68-276)||(17642223-17642431)
chr2 (47-275)||(17712134-17712359)
[»] chr3 (5 HSPs)
chr3 (120-213)||(5924580-5924673)
chr3 (120-232)||(5918255-5918367)
chr3 (116-232)||(5906031-5906147)
chr3 (120-232)||(5977883-5977998)
chr3 (120-232)||(5983856-5983971)
[»] chr4 (1 HSPs)
chr4 (121-213)||(4208435-4208527)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 40 - 276
Target Start/End: Complemental strand, 17651123 - 17650887
Alignment:
Q  40 ctgttaaacaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacactacccatgttggaaatgccagccagaaatat 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17651123 ctgttaaacaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacactacccatgttggaaatgccagccagaaatat 17651024  T
Q  140 taccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacg 239  Q
    || ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17651023 tagcagcttgacataaagcatccctccatttttgcaccttatccttatcatcactaaacctctcctcatgttttctcaaagcttcaccataagcaccacg 17650924  T
Q  240 ttggtggcgaacttgtgatggatcgacatcataaaaa 276  Q
    |||||||||||||||||||||||||||||||||||||    
T  17650923 ttggtggcgaacttgtgatggatcgacatcataaaaa 17650887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 17661317 - 17661092
Alignment:
Q  53 aaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaacact--acccatgttggaaatgccagccagaaatattaccagcttga 150  Q
    |||||||  ||||| |||||||||  |||||||||||||||||||||| |||| |||  ||||||||||||||||||||||||||| |||| ||||||||    
T  17661317 aaaagaaccgtaattaaaataaataaataaaagtatggtatgagattagaaaatactgtacccatgttggaaatgccagccagaaacattagcagcttga 17661218  T
Q  151 cataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacgttggtggcgaa 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  17661217 cataaagcatctctccatttttgcaccttatccttatcatcacaaaacctcttctcatgttttcccaaagcttcaccataagcaccactttggtggcgaa 17661118  T
Q  251 cttgtgatggatcgacatcataaaaa 276  Q
    ||||||||||||||||||||||||||    
T  17661117 cttgtgatggatcgacatcataaaaa 17661092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 47 - 276
Target Start/End: Complemental strand, 17699152 - 17698921
Alignment:
Q  47 acaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattataaaaca--ctacccatgttggaaatgccagccagaaatattacca 144  Q
    ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||| |||| ||    
T  17699152 acaaacaaaagcatggtaattaaaataaatgcataaaagtatggtatgagattataaaataatctacccatgttggaaatgccagccagaaacattagca 17699053  T
Q  145 gcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacgttggt 244  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| | |||||    
T  17699052 gcttgacataaagaatccctccatttttgcaccttatccttatcatcactaaacctctcttcatgttttttcaaagcttcaccataagcaccgctttggt 17698953  T
Q  245 ggcgaacttgtgatggatcgacatcataaaaa 276  Q
    |||||||||||||||||||||| |||||||||    
T  17698952 ggcgaacttgtgatggatcgacgtcataaaaa 17698921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 53 - 276
Target Start/End: Complemental strand, 17617495 - 17617271
Alignment:
Q  53 aaaagaagggtaatcaaaataaatgcataaaagtatggtatgagat-tataaaacactacccatgttggaaatgccagccagaaatattaccagcttgac 151  Q
    |||||||  ||||| |||||||||  |||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||| |||| |||||||||    
T  17617495 aaaagaaccgtaattaaaataaataaataaaagtatggtatgagatatataatactgtacccatgttggaaatgccagccagaaacattagcagcttgac 17617396  T
Q  152 ataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacgttggtggcgaac 251  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||| | ||||||||||||    
T  17617395 ataaagcatccctccatttttgcaccttatccttatcatcacaaaacctttcctcctgttttttcaaagcttcaccataagcaccgctttggtggcgaac 17617296  T
Q  252 ttgtgatggatcgacatcataaaaa 276  Q
    |||||||||||||||||||||||||    
T  17617295 ttgtgatggatcgacatcataaaaa 17617271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 68 - 276
Target Start/End: Complemental strand, 17642431 - 17642223
Alignment:
Q  68 aaaataaatgcataaaagtatggtatgagattataaaacact--acccatgttggaaatgccagccagaaatattaccagcttgacataaagcatctctc 165  Q
    |||||||||||||||  ||||||||||||||||||||| |||  ||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||    
T  17642431 aaaataaatgcataa--gtatggtatgagattataaaatactgtacccatgttggaaatgccagccagaaacattagcagcttgacataaagcatccctc 17642334  T
Q  166 catttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacgttggtggcgaacttgtgatggatcga 265  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||| ||||    
T  17642333 catttttgcaccttatccttatcatcactaaacctctcctcatgttttttcaaagcatcaccataagcaccactttggtggcgaacttgtgatggttcga 17642234  T
Q  266 catcataaaaa 276  Q
    |||||||||||    
T  17642233 catcataaaaa 17642223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 47 - 275
Target Start/End: Complemental strand, 17712359 - 17712134
Alignment:
Q  47 acaaacaaaagaagggtaatcaaaataaatgcataaaagtatggtatgagattat-aaaacact--acccatgttggaaatgccagccagaaatattacc 143  Q
    |||| |||| ||| |||||| |||||||||||||||||||||||||||||||||| |||| |||  |||| |||||||||| ||||||||||| |||| |    
T  17712359 acaagcaaaggaacggtaattaaaataaatgcataaaagtatggtatgagattattaaaatactgtacccgtgttggaaatcccagccagaaacattagc 17712260  T
Q  144 agcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaagcttcaccataagcaccacgttgg 243  Q
    |||||||||||||||||| ||||||||||||||||      |||||||| |||| |||| |||||||||| ||||||| ||||||||||||||||  |||    
T  17712259 agcttgacataaagcatccctccatttttgcacct------tatcatcagaaaatctcttctcatgttttttcaaagcatcaccataagcaccactctgg 17712166  T
Q  244 tggcgaacttgtgatggatcgacatcataaaa 275  Q
    ||||||||||||||||||||||||||||||||    
T  17712165 tggcgaacttgtgatggatcgacatcataaaa 17712134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 5924580 - 5924673
Alignment:
Q  120 gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgtttt 213  Q
    ||||||||| ||||| |||||| ||||||||  |||||||||||||||||| |||| ||||| ||| ||||| | |||||||||||| ||||||    
T  5924580 gaaatgccatccagacatattagcagcttgatgtaaagcatctctccatttctgcatcttatgcttgtcatctccaaacctctcctcgtgtttt 5924673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 5918255 - 5918367
Alignment:
Q  120 gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttctcaaa 219  Q
    ||||||||| ||||| |||||| ||||||||| ||||||||| |||||||| ||||||||||| |  ||||| | |||||||  ||||||||||   |||    
T  5918255 gaaatgccatccagacatattagcagcttgacgtaaagcatccctccatttctgcaccttatcttcctcatctccaaacctcatctcatgttttgcaaaa 5918354  T
Q  220 gcttcaccataag 232  Q
    |||||| ||||||    
T  5918355 gcttcagcataag 5918367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 232
Target Start/End: Original strand, 5906031 - 5906147
Alignment:
Q  116 gttggaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgttttct 215  Q
    ||||||||||||| ||||| | | || ||||||| |  ||||| || |||||||| |||||||||||||| ||||| | ||||||  |||||||||||      
T  5906031 gttggaaatgccatccagagagactagcagcttgccgcaaagcgtccctccatttctgcaccttatccttctcatctctaaaccttacctcatgttttgc 5906130  T
Q  216 caaagcttcaccataag 232  Q
     ||||||||| ||||||    
T  5906131 aaaagcttcagcataag 5906147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 5977883 - 5977998
Alignment:
Q  120 gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcacctt---atccttatcatcacaaaacctctcctcatgttttctc 216  Q
    ||||||||| ||||| | |||  |||||||||  |||||||| |||||||| ||||||||   |||||| ||||| | ||||||| |||||||||||       
T  5977883 gaaatgccatccagagacatttgcagcttgacgcaaagcatccctccatttctgcaccttgctatccttctcatctccaaacctcacctcatgttttgca 5977982  T
Q  217 aaagcttcaccataag 232  Q
    ||||||||| ||||||    
T  5977983 aaagcttcagcataag 5977998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 5983856 - 5983971
Alignment:
Q  120 gaaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcacctt---atccttatcatcacaaaacctctcctcatgttttctc 216  Q
    ||||||||| ||||| | |||  |||||||||  |||||||| |||||||| ||||||||   |||||| ||||| | ||||||| |||||||||||       
T  5983856 gaaatgccatccagagacatttgcagcttgacgcaaagcatccctccatttctgcaccttgctatccttctcatctccaaacctcacctcatgttttgca 5983955  T
Q  217 aaagcttcaccataag 232  Q
    ||||||||| ||||||    
T  5983956 aaagcttcagcataag 5983971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 4208435 - 4208527
Alignment:
Q  121 aaatgccagccagaaatattaccagcttgacataaagcatctctccatttttgcaccttatccttatcatcacaaaacctctcctcatgtttt 213  Q
    |||||||| ||||| |||||| |||| ||| | |||||||| |||||||| |||||||||| ||| ||||| | ||||||| |||||||||||    
T  4208435 aaatgccacccagacatattagcagcctgatacaaagcatccctccatttctgcaccttattcttctcatctctaaacctcacctcatgtttt 4208527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University