View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_high_10 (Length: 355)
Name: NF14663_high_10
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_high_10 |
 | |
|
| [»] scaffold0391 (2 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 33992044 - 33992372
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992044 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
33992143 |
T |
|
| Q |
105 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatctttaagtaattaattaacctcttctcatttaccaggaaaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33992144 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatctttaagtaattaattaacctcttctcatttaccaggaaaaa |
33992243 |
T |
|
| Q |
205 |
tgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccattt |
304 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
33992244 |
tgcaagtgacacagacaataacaactacaataatcacttcatcatccttcatgatattctaagagatcttggaatttaccaaagcaccaagcaaccattt |
33992343 |
T |
|
| Q |
305 |
gagcaaagaaaaagactgattattgacat |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33992344 |
gagcaaagaaaaagactgattattgacat |
33992372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 33952524 - 33952853
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952524 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactatgactattattattatattttcttctaggctacttaaa |
33952623 |
T |
|
| Q |
105 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatc-tttaagtaattaattaacctcttctcatttaccaggaaaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
33952624 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttttaagtaactaattaacctctgctcatttaccaggaaaa |
33952723 |
T |
|
| Q |
204 |
atgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccatt |
303 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33952724 |
atgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcgccaaggaaccatt |
33952823 |
T |
|
| Q |
304 |
tgagcaaagaaaaagactgattattgacat |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33952824 |
tgagcaaagaaaaagactgattattgacat |
33952853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 33959824 - 33960159
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattat------attttcttctaggcta |
98 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33959824 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33959923 |
T |
|
| Q |
99 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttt-aagtaattaattaacctcttctcatttacca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
33959924 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33960023 |
T |
|
| Q |
198 |
ggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaagga |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33960024 |
ggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaagga |
33960123 |
T |
|
| Q |
298 |
accatttgagcaaagaaaaagactgattattgacat |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33960124 |
accatttgagcaaagaaaaagactgattattgacat |
33960159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 33975124 - 33975463
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattat------attttcttctaggcta |
98 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33975124 |
atggaaatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattattattatattttcttctaggcta |
33975223 |
T |
|
| Q |
99 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatcttt-aagtaattaattaacctcttctcatttacca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
33975224 |
cttaaattgttaaatatctcacatgaatgatactctacataaatcctgtcaaataattttttatcttttaagtaactaattaacctctgctcatttacca |
33975323 |
T |
|
| Q |
198 |
ggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaagga |
297 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975324 |
ggaaaaatgcaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaagga |
33975423 |
T |
|
| Q |
298 |
accatttgagcaaagaaaaagactgattattgacatgaat |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975424 |
accatttgagcaaagaaaaagactgattattgacatgaat |
33975463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 196 - 330
Target Start/End: Original strand, 33913544 - 33913678
Alignment:
| Q |
196 |
caggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaag |
295 |
Q |
| |
|
||||||||||||||||||||| || | || ||||||||| |||||||| ||||||||||| |||||||||| || |||| ||| |||| || | || |
|
|
| T |
33913544 |
caggaaaaatgcaagtgacacagaaagttactactacaatagccacttcatattccttcatgatcttctaagagagctaggaaattatcaaaacaaccag |
33913643 |
T |
|
| Q |
296 |
gaaccatttgagcaaagaaaaagactgattattga |
330 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||||| |
|
|
| T |
33913644 |
gaaccaattgaacaaagaaaaagacttcttattga |
33913678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 33942273 - 33942397
Alignment:
| Q |
195 |
ccaggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaa |
294 |
Q |
| |
|
|||||||||||||||||||||| || || || |||||| ||||||||||||| ||||||||||| | || ||||| ||||| | ||| |||| |||| | |
|
|
| T |
33942273 |
ccaggaaaaatgcaagtgacacagaaaattactactaca-taatcacttcatcgtccttcatgatctgctgagagagcttgggaattatcaaaacaccca |
33942371 |
T |
|
| Q |
295 |
ggaaccatttgagcaaagaaaaagac |
320 |
Q |
| |
|
|||||| |||| ||||||||||||| |
|
|
| T |
33942372 |
ggaacctattgaacaaagaaaaagac |
33942397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 8278231 - 8277899
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtactacgactattattattatattttcttctaggctacttaaa |
104 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||| |
|
|
| T |
8278231 |
atggaaatcatcaataaattaggcctcatgaatttggctaatgtgataataccaaggtactaggactattattattatattttcttcttggctaataaaa |
8278132 |
T |
|
| Q |
105 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtcaaatgattttttatctttaagtaattaattaacctcttctcatttaccaggaaaaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||| |||||||||||| |||||||||| | |||| |
|
|
| T |
8278131 |
ttgttaaatatctcacatgaatgatactctacataaatcctgtgaaataatttcttatctttaagtaactaattaacctctgctcatttacctgaaaaag |
8278032 |
T |
|
| Q |
205 |
tgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccattt |
304 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8278031 |
tgaaagtgacacggacaataacaactacaataatcacttcatcatccttcatgatattctaagagaacttggaatttaccaaagcaccaaggaaccattt |
8277932 |
T |
|
| Q |
305 |
gagcaaagaaaaagactgattattgacatgaat |
337 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||| |
|
|
| T |
8277931 |
gagcaaagagaaaaactgattattgacaagaat |
8277899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 2891616 - 2891495
Alignment:
| Q |
173 |
ttaattaacctcttctcatttaccaggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaac |
272 |
Q |
| |
|
||||||| ||| | |||||||||||| ||||||||||||||||| || || ||||||| |||| |||||||||||| ||||| || ||||| ||| | |
|
|
| T |
2891616 |
ttaattaccctttgctcatttaccagaaaaaatgcaagtgacacatacaattacaactataatagccacttcatcatctttcataatcttctactagagc |
2891517 |
T |
|
| Q |
273 |
ttggaatttaccaaagcaccaa |
294 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
2891516 |
ttggaatttctcaaagcaccaa |
2891495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 175 - 337
Target Start/End: Original strand, 12246 - 12408
Alignment:
| Q |
175 |
aattaacctcttctcatttaccaggaaaaatgcaagtgacacggacgataacaactacaataatcacttcatcatccttcatgatattctaagagaactt |
274 |
Q |
| |
|
||||||||||| ||||| ||| ||||||||||||||||| | ||| || ||||||||||||| ||||||||||||||||||||| |||||||||| ||| |
|
|
| T |
12246 |
aattaacctctgctcatatactaggaaaaatgcaagtgatgcagacaattacaactacaataaccacttcatcatccttcatgatcttctaagagatctt |
12345 |
T |
|
| Q |
275 |
ggaatttaccaaagcaccaaggaaccatttgagcaaagaaaaagactgattattgacatgaat |
337 |
Q |
| |
|
|||||||||||| |||| || |||||| ||||| | |||||||| |||||||||||||||||| |
|
|
| T |
12346 |
ggaatttaccaatgcactaaagaaccaattgagaagagaaaaaggctgattattgacatgaat |
12408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 12115 - 12174
Alignment:
| Q |
5 |
atggacatcatcaacaaattaggcatcatgaatttggctaatgtcataataccaaggtac |
64 |
Q |
| |
|
||||| ||||| |||||||||||| ||||||| ||||||||||||||||| |||||||| |
|
|
| T |
12115 |
atggaaatcataaacaaattaggctccatgaatctggctaatgtcataatagcaaggtac |
12174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University