View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14663_high_15 (Length: 280)

Name: NF14663_high_15
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14663_high_15
NF14663_high_15
[»] chr7 (12 HSPs)
chr7 (13-260)||(27220278-27220525)
chr7 (13-260)||(27249120-27249373)
chr7 (58-260)||(27304440-27304642)
chr7 (25-260)||(27243151-27243389)
chr7 (111-260)||(27301583-27301735)
chr7 (132-260)||(27281740-27281868)
chr7 (210-260)||(27312660-27312710)
chr7 (219-259)||(27165589-27165629)
chr7 (221-258)||(27296210-27296247)
chr7 (221-260)||(27271629-27271668)
chr7 (221-259)||(27322940-27322978)
chr7 (215-259)||(27158049-27158093)
[»] chr1 (2 HSPs)
chr1 (58-260)||(14889759-14889964)
chr1 (96-256)||(14884146-14884309)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 27220525 - 27220278
Alignment:
Q  13 gaagcaaaggctggaagattgagcccaggtatgccggccataagagatttgaggcaaccgcaaacatgacgacgatcttgcgtagttttggcttggctat 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27220525 gaagcaaaggctggaagattgagtccaggtatgccggccataagagatttgaggcaaccgcaaacatgatgacgatcttgcgtagttttggcttggctat 27220426  T
Q  113 ttaaagtcttaaccctattgcaacatggttgagggggagatggacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggaca 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27220425 ttaaagtcttaaccctattgcaacatggttgagggggagatggacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggaca 27220326  T
Q  213 tgaaggggcagcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27220325 tgaaggggcagcattggctaatggaatgcccaaaaccaagcatatcat 27220278  T

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Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 260
Target Start/End: Complemental strand, 27249373 - 27249120
Alignment:
Q  13 gaagcaaaggctggaagattgagcccaggtatgccggccataagagatttgaggcaaccgcaaacatgacgacgatcttgcgtagttttggcttggctat 112  Q
    ||||||| ||| ||||||||||| |||||||||||| |||| |  ||||||||||||||||||||||  ||||||||||| |||||||||| ||||| ||    
T  27249373 gaagcaatggcaggaagattgagtccaggtatgccgcccatcatggatttgaggcaaccgcaaacatctcgacgatcttgggtagttttggattggccat 27249274  T
Q  113 ttaaagtcttaaccctattgcaacatggttgagggggaga------tggacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgc 206  Q
    ||||||||||||||  ||||||||||||| | ||||||||      ||||||||||| || ||||| ||||| |||||||| ||||||||||  |||| |    
T  27249273 ttaaagtcttaaccgcattgcaacatggtggtgggggagagatgggtggacctgggtgtgttacgtacggaacgcatggtgctaaagtttgttgcacttc 27249174  T
Q  207 aggacatgaaggggcagcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
    |||||||||||| |||||||| |||| ||||||||||||||| |||||||||||    
T  27249173 aggacatgaaggagcagcattagctagtggaatgcccaaaactaagcatatcat 27249120  T

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Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 58 - 260
Target Start/End: Complemental strand, 27304642 - 27304440
Alignment:
Q  58 gatttgaggcaaccgcaaacatgacgacgatcttgcgtagttttggcttggctatttaaagtcttaaccctattgcaacatggttgagggggagatggac 157  Q
    ||||||||||||||||||||||  ||||||||| | | ||||| || ||||| || ||||||||||| || |||||||||||||| |||||||| |  |     
T  27304642 gatttgaggcaaccgcaaacatctcgacgatctaggggagtttgggattggccatgtaaagtcttaatcccattgcaacatggttcagggggaggtccat 27304543  T
Q  158 ctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggacatgaaggggcagcattggctaatggaatgcccaaaaccaagcatat 257  Q
     ||||||||   ||| | ||||||||| |||||||||||||  ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  27304542 gtgggtttgtcgcgtacagaaggcatgttgttaaagtttgttgcactgcaggacatgaaggggcagcactggctagtggaatgcccaaaaccaagcatat 27304443  T
Q  258 cat 260  Q
    |||    
T  27304442 cat 27304440  T

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Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 260
Target Start/End: Complemental strand, 27243389 - 27243151
Alignment:
Q  25 ggaagattgagcccaggtatgccggccataagagatttgaggcaaccgcaaacatgacgacgatcttgcgtagttttggcttggctatttaaagtcttaa 124  Q
    ||||||||||| ||||||||| || | || |  ||||||| ||||| ||||  ||  ||||||||||| | ||| | || ||||| || || || |||||    
T  27243389 ggaagattgagtccaggtatgtcgcctatcatggatttgacgcaactgcaacaatctcgacgatcttggggagtatgggtttggccatgtatagccttaa 27243290  T
Q  125 ccctattgcaacatggttgagggggagatgg---acctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggacatgaaggggc 221  Q
    ||  |||||||||||||| ||||||||  ||   |||||||| || ||||| |  |||||||||||||||||||||| | | | |||||||||||| |||    
T  27243289 ccgcattgcaacatggttcagggggagggggtgaacctgggtgtgttacgtactcaaggcatggtgttaaagtttgttcaatttcaggacatgaagcggc 27243190  T
Q  222 agcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  27243189 agcattggctagtggaatgcccaaaaccaagcatatcat 27243151  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 27301735 - 27301583
Alignment:
Q  111 atttaaagtcttaaccctattgcaacatggttgagggggagat---ggacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgca 207  Q
    ||||| |||||||||||  ||||||||| | | ||||||||||   | |  |||||||| ||| |  |||||||||||||||||| |||||  |||| ||    
T  27301735 atttacagtcttaaccccgttgcaacattgatcagggggagataatgtatgtgggtttgttacataaggaaggcatggtgttaaattttgtttcacttca 27301636  T
Q  208 ggacatgaaggggcagcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
      ||||| | | | |||||||||||||||||||| ||||||||||||||||||    
T  27301635 tcacatgtaagtgaagcattggctaatggaatgcacaaaaccaagcatatcat 27301583  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 260
Target Start/End: Complemental strand, 27281868 - 27281740
Alignment:
Q  132 gcaacatggttgagggggagatggacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggacatgaaggggcagcattggct 231  Q
    |||||||||||||||||||| ||||  ||||| || ||||| || ||||||||  |||||||||    ||    ||||||||| |  | |||||||||||    
T  27281868 gcaacatggttgagggggaggtggatttgggtatgctacgtacgaaaggcatgccgttaaagttatatccgtatcaggacatgtaatgacagcattggct 27281769  T
Q  232 aatggaatgcccaaaaccaagcatatcat 260  Q
    | |||||||||||||||||||||||||||    
T  27281768 agtggaatgcccaaaaccaagcatatcat 27281740  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 27312710 - 27312660
Alignment:
Q  210 acatgaaggggcagcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
    ||||||| |||||||||||||||| ||| ||||||||||||||||||||||    
T  27312710 acatgaaagggcagcattggctaagggagtgcccaaaaccaagcatatcat 27312660  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 27165629 - 27165589
Alignment:
Q  219 ggcagcattggctaatggaatgcccaaaaccaagcatatca 259  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  27165629 ggcagcattggctaatggaatggccaaaaccaagcatatca 27165589  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 27296247 - 27296210
Alignment:
Q  221 cagcattggctaatggaatgcccaaaaccaagcatatc 258  Q
    |||||||||||| |||||||||||||||||||||||||    
T  27296247 cagcattggctagtggaatgcccaaaaccaagcatatc 27296210  T

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Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 27271668 - 27271629
Alignment:
Q  221 cagcattggctaatggaatgcccaaaaccaagcatatcat 260  Q
    |||||||||||| |||||||| ||||||||||||||||||    
T  27271668 cagcattggctagtggaatgctcaaaaccaagcatatcat 27271629  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 27322978 - 27322940
Alignment:
Q  221 cagcattggctaatggaatgcccaaaaccaagcatatca 259  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27322978 cagcattggctaagggaatgccaaaaaccaagcatatca 27322940  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 27158093 - 27158049
Alignment:
Q  215 aaggggcagcattggctaatggaatgcccaaaaccaagcatatca 259  Q
    ||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  27158093 aagggccagcatttgctaatggaatggccaaaaccaagcacatca 27158049  T

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Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 260
Target Start/End: Original strand, 14889759 - 14889964
Alignment:
Q  58 gatttgaggcaaccgcaaacatgacgacgatcttgcgtagttttggcttggctatttaaagtcttaaccctattgcaacatggttgaggggga---gatg 154  Q
    ||||||||||||||||||||||  |||||||||||   ||||  |||||||  ||||||||||||||||| |||||||||||||| |||||||   | ||    
T  14889759 gatttgaggcaaccgcaaacatctcgacgatcttgttgagttcgggcttggtcatttaaagtcttaaccccattgcaacatggttcagggggagggggtg 14889858  T
Q  155 gacctgggtttgatacgtgcggaaggcatggtgttaaagtttgtgccactgcaggacatgaaggggcagcattggctaatggaatgcccaaaaccaagca 254  Q
    ||||||| | |   | ||  |||  |||||||| ||||||||||  |||| ||||||||||||| |||| |||||| | |||||||| ||||||||||||    
T  14889859 gacctggttgtatcaagtatggaccgcatggtgctaaagtttgttgcacttcaggacatgaaggtgcagaattggccagtggaatgctcaaaaccaagca 14889958  T
Q  255 tatcat 260  Q
    ||||||    
T  14889959 tatcat 14889964  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 256
Target Start/End: Original strand, 14884146 - 14884309
Alignment:
Q  96 agttttggcttggctatttaaagtcttaaccctattgcaacatggttgagggggaga---tggacctgggtttgatacgtgcggaaggcatggtgttaaa 192  Q
    |||||||  ||||| || ||||||||||  || |||||||||||| | ||||||||    |||||||||||||| || || ||||| |||||||| ||||    
T  14884146 agttttgatttggccatctaaagtcttatacccattgcaacatgggtcagggggagggggtggacctgggtttgttaggtacggaatgcatggtgctaaa 14884245  T
Q  193 gtttgtgccactgcaggacatgaaggggcagcattggctaatggaatgcccaaaaccaagcata 256  Q
    ||||||  ||||  ||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  14884246 gtttgttgcacttgaggacatgaaggggcagaattggctattggaatgcccaaaaccaagcata 14884309  T

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