View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14663_high_3 (Length: 475)

Name: NF14663_high_3
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14663_high_3
NF14663_high_3
[»] chr1 (5 HSPs)
chr1 (75-233)||(34338634-34338796)
chr1 (21-81)||(38125596-38125656)
chr1 (31-71)||(22470826-22470866)
chr1 (90-170)||(18700586-18700667)
chr1 (40-71)||(22477738-22477769)
[»] chr6 (11 HSPs)
chr6 (342-459)||(23984238-23984355)
chr6 (362-459)||(18841823-18841920)
chr6 (362-458)||(16643812-16643908)
chr6 (350-459)||(21360150-21360259)
chr6 (350-459)||(23964132-23964241)
chr6 (342-459)||(25652503-25652620)
chr6 (362-458)||(16634503-16634599)
chr6 (342-449)||(16304559-16304669)
chr6 (31-71)||(18841500-18841540)
chr6 (90-170)||(21360480-21360562)
chr6 (90-170)||(23964462-23964544)
[»] scaffold0429 (1 HSPs)
scaffold0429 (150-259)||(13079-13188)
[»] chr4 (6 HSPs)
chr4 (342-459)||(34840655-34840772)
chr4 (342-456)||(25248887-25249001)
chr4 (75-260)||(18008266-18008444)
chr4 (31-71)||(25249266-25249306)
chr4 (35-71)||(34840354-34840390)
chr4 (224-260)||(19646894-19646930)
[»] scaffold0144 (2 HSPs)
scaffold0144 (362-458)||(1764-1860)
scaffold0144 (362-458)||(11564-11660)
[»] chr3 (6 HSPs)
chr3 (75-260)||(13273093-13273271)
chr3 (76-260)||(5146267-5146442)
chr3 (75-260)||(27976964-27977142)
chr3 (21-81)||(17658047-17658107)
chr3 (339-414)||(1478490-1478565)
chr3 (404-444)||(4505107-4505147)
[»] chr7 (9 HSPs)
chr7 (364-459)||(17209865-17209960)
chr7 (32-71)||(16122700-16122739)
chr7 (32-71)||(16149439-16149478)
chr7 (404-444)||(16911370-16911410)
chr7 (36-71)||(29080102-29080137)
chr7 (190-233)||(29080270-29080313)
chr7 (36-71)||(29094861-29094896)
chr7 (189-233)||(16122521-16122565)
chr7 (189-233)||(16149260-16149304)
[»] chr5 (5 HSPs)
chr5 (362-459)||(23027234-23027331)
chr5 (21-81)||(27062194-27062254)
chr5 (339-414)||(23635720-23635795)
chr5 (339-414)||(23837097-23837172)
chr5 (75-138)||(23982948-23983013)
[»] scaffold1380 (2 HSPs)
scaffold1380 (342-454)||(1192-1304)
scaffold1380 (31-71)||(887-927)
[»] scaffold0871 (1 HSPs)
scaffold0871 (342-459)||(263-380)
[»] chr8 (5 HSPs)
chr8 (362-459)||(6584400-6584497)
chr8 (75-170)||(31209543-31209643)
chr8 (379-449)||(36254132-36254202)
chr8 (31-71)||(6584832-6584872)
chr8 (90-170)||(23091054-23091135)
[»] chr2 (1 HSPs)
chr2 (76-260)||(33308591-33308767)
[»] scaffold1547 (1 HSPs)
scaffold1547 (339-414)||(18-93)
[»] scaffold0077 (2 HSPs)
scaffold0077 (155-215)||(30633-30693)
scaffold0077 (161-237)||(30140-30216)
[»] scaffold0439 (1 HSPs)
scaffold0439 (31-71)||(13725-13765)
[»] scaffold0046 (2 HSPs)
scaffold0046 (31-71)||(36167-36207)
scaffold0046 (31-71)||(61973-62013)
[»] scaffold0047 (1 HSPs)
scaffold0047 (32-71)||(81567-81606)
[»] scaffold0455 (1 HSPs)
scaffold0455 (224-260)||(5596-5632)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 75 - 233
Target Start/End: Complemental strand, 34338796 - 34338634
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaaga-tcacaaaaa---tatgaacatcaccaagaactcatgaacattcat 170  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||| | |||||||||   |||||||||||||||||||||||||||||||||    
T  34338796 tacaaaccctaatcctttctctctcatacaaaatacagatcaaacacaaaaaaaatcacaaaaaaaatatgaacatcaccaagaactcatgaacattcat 34338697  T
Q  171 tctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatca 233  Q
    |||||||||||||||| |||||||||||||| ||||| |||  || |||||| ||||||||||    
T  34338696 tctccataacaccttccaaaaatcaacataaacaccataaatccacaaaaccaactcaaatca 34338634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 38125656 - 38125596
Alignment:
Q  21 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcatactacaaac 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38125656 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcataccacaaac 38125596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 22470826 - 22470866
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  22470826 acgcgtcagagtcagaaaacgggtcagattggtccctatca 22470866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 18700586 - 18700667
Alignment:
Q  90 tttctctctgataccaaatacagatcaaacacaaaaagatcacaaaaatatgaacatcaccaaga--actcatgaacattcat 170  Q
    ||||||||| || |||||||||||||||| || |||| |||||| ||||||||||||||||||||  ||||||||| ||||||    
T  18700586 tttctctctcattccaaatacagatcaaataccaaaa-atcacacaaatatgaacatcaccaagaacactcatgaatattcat 18700667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 71
Target Start/End: Original strand, 22477738 - 22477769
Alignment:
Q  40 agtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||||||||||||||||||||||||    
T  22477738 agtcagaaaacgggtcagattggtccctatca 22477769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 342 - 459
Target Start/End: Complemental strand, 23984355 - 23984238
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| |||||||||||||   |||||||| |||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23984355 aatcggaccggattcgagctagatcggaggaatttagcaagaaggaagtgaatccgagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 23984256  T
Q  442 gtaatttcactcaaactt 459  Q
    ||||||||||||||||||    
T  23984255 gtaatttcactcaaactt 23984238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 362 - 459
Target Start/End: Original strand, 18841823 - 18841920
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaactt 459  Q
    ||||||||| |||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18841823 ggatcggaggaatttagcaagaaggaagtgaatccgagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaactt 18841920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 16643812 - 16643908
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaact 458  Q
    ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16643812 ggatcggaggaatttagcaagaaagaagtgaatccgagcttaaagtagtagatccggtcttctccgttttgaaaccggaggtaatttcactcaaact 16643908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 350 - 459
Target Start/End: Complemental strand, 21360259 - 21360150
Alignment:
Q  350 cggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttc 449  Q
    ||||||||||   |||||||| |||| | |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21360259 cggattcgagctagatcggaggaatttagcaagaaggaagtgaattcgagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttc 21360160  T
Q  450 actcaaactt 459  Q
    ||||||||||    
T  21360159 actcaaactt 21360150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 350 - 459
Target Start/End: Complemental strand, 23964241 - 23964132
Alignment:
Q  350 cggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttc 449  Q
    ||||||||||   |||||||| |||| | |||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23964241 cggattcgagctagatcggaggaatttagcaagaaggaagtgaattcgagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttc 23964142  T
Q  450 actcaaactt 459  Q
    ||||||||||    
T  23964141 actcaaactt 23964132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 25652503 - 25652620
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| ||| |||||||||  ||||||||| |||| | ||||||  ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  25652503 aatcggactggattcgagctggatcggaggaatttagcaagaagaaagtgaatccgagcttaaagtagtagatccggtcttctccgttctgaaaccgaag 25652602  T
Q  442 gtaatttcactcaaactt 459  Q
    ||||||||||||||||||    
T  25652603 gtaatttcactcaaactt 25652620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 16634503 - 16634599
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaact 458  Q
    ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  16634503 ggatcggaggaatttagcaagaaagaagtgaatccgagcttaaagtagtagatccggtcttctcctttttgaaaccggaggtaatttcactcaaact 16634599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 449
Target Start/End: Complemental strand, 16304669 - 16304559
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtag---atccggtcttctccgttttgaaaccg 438  Q
    |||| ||| ||||||||  |||||||||| |||| | |||||||||||| |||| ||||||||||||||||   |||| |||||||||||||||||||||    
T  16304669 aatcggactggattcgaaccggatcggagtaatttagcaagaaagaagtaaatccgagcttaaagtagtagtagatccagtcttctccgttttgaaaccg 16304570  T
Q  439 aaggtaatttc 449  Q
    |||||| ||||    
T  16304569 aaggtagtttc 16304559  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 18841500 - 18841540
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  18841500 acgcgtcagagacagaaaacgggtcagattggtccctatca 18841540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 21360562 - 21360480
Alignment:
Q  90 tttctctctgataccaaatacagatcaaacacaaaaagatcacaaaaa-tatgaacatcaccaaga--actcatgaacattcat 170  Q
    ||||||||| || |||||||| ||||||| || |||| |||||||||| ||||||||||||||| |  ||||||||| ||||||    
T  21360562 tttctctctcattccaaatacggatcaaataccaaaa-atcacaaaaaatatgaacatcaccaacaacactcatgaatattcat 21360480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 23964544 - 23964462
Alignment:
Q  90 tttctctctgataccaaatacagatcaaacacaaaaagatcacaaaaa-tatgaacatcaccaaga--actcatgaacattcat 170  Q
    ||||||||| || |||||||| ||||||| || |||| |||||||||| ||||||||||||||| |  ||||||||| ||||||    
T  23964544 tttctctctcattccaaatacggatcaaataccaaaa-atcacaaaaaatatgaacatcaccaacaacactcatgaatattcat 23964462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 150 - 259
Target Start/End: Original strand, 13079 - 13188
Alignment:
Q  150 caagaactcatgaacattcattctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgt-aatcaccat 248  Q
    ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||    
T  13079 caagaactcatgaacattcattctccataacaccttccaaacatcaacataatcacca-aaactcataaaactgactcaaatcatcacgtaaatcaccat 13177  T
Q  249 aaactaacaga 259  Q
    |||| ||||||    
T  13178 aaacaaacaga 13188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 34840655 - 34840772
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| ||| |||||||||  ||||||||| |||| | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34840655 aatcggactggattcgagctggatcggaggaatttagcaagaagaaagtgaatccgagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 34840754  T
Q  442 gtaatttcactcaaactt 459  Q
    ||||||||||||||||||    
T  34840755 gtaatttcactcaaactt 34840772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 342 - 456
Target Start/End: Complemental strand, 25249001 - 25248887
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| ||| |||||||||  ||||||||| |||| | ||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  25249001 aatcggactggattcgagctggatcggaggaatttagcaagaagaaagtgaatccgagcttaatgtagtagatccggtcttctccgttttgaaaccgaag 25248902  T
Q  442 gtaatttcactcaaa 456  Q
    |||||||||||||||    
T  25248901 gtaatttcactcaaa 25248887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 18008266 - 18008444
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaaga-tcacaaaaat-atgaacatcaccaagaactcatgaacattcattc 172  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| |||||||    ||||||| ||||||| || |  |    
T  18008266 tacaaaccctaatcctttctctctcataccaaatacagatcaaacataaaaaaaatcacaaaaattatgaacaatctcaagaacacatgaaccttgaccc 18008365  T
Q  173 tccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgtaatcaccataaactaacagaa 260  Q
    |          | | ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  18008366 tt---------tccaaaaaatcaatataatcaccacaaactcatcaaaccgactcaaatcatcacataatcaccataaactaacagaa 18008444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 25249306 - 25249266
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  25249306 acgcgtcagagtcagaaaacggatcagattggtccctatca 25249266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 34840354 - 34840390
Alignment:
Q  35 gtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  34840354 gtcagagtcagaaaacgggtcagattggtccctatca 34840390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 19646930 - 19646894
Alignment:
Q  224 actcaaatcatcacgtaatcaccataaactaacagaa 260  Q
    |||||||||||||| ||||||||||||||||||||||    
T  19646930 actcaaatcatcacataatcaccataaactaacagaa 19646894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 362 - 458
Target Start/End: Complemental strand, 1860 - 1764
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaact 458  Q
    ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1860 ggatcggaggaatttagcaagaaagaagtgaatccgagcttaaagtagtagatccggtcttctccgttttgaaaccggaggtaatttcactcaaact 1764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 11564 - 11660
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaact 458  Q
    ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  11564 ggatcggaggaatttagcaagaaagaagtgaatccgagcttaaagtagtagatccggtcttctcctttttgaaaccggaggtaatttcactcaaact 11660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 13273093 - 13273271
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaaga--tcacaaaaat-atgaacatcaccaagaactcatgaacattcatt 171  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |||||||||| |||||||    ||||||| ||||||| || |      
T  13273093 tacaaaccctaatcctttctctctcataccaaatacagatcaaacacaaaaaaaaatcacaaaaattatgaacaatctcaagaacacatgaaccttgacc 13273192  T
Q  172 ctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgtaatcaccataaactaacagaa 260  Q
    ||          ||| |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13273193 ct----------ttccaaaaatgaatataatcaccacaaactcataaaaccgactcaaatcatcacataatcaccataaactaacagaa 13273271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 5146442 - 5146267
Alignment:
Q  76 acaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaagatcacaaaaa----tatgaacatcaccaagaactcatgaacattcatt 171  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||| |||| ||||||||||    |||||||||||||||||||| |||||||||||||    
T  5146442 acaaaccctaatcctttctctctcatacagaatacagatcaaacaccaaaa-atcacaaaaaaaaatatgaacatcaccaagaacttatgaacattcatt 5146344  T
Q  172 ctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgt-aatcaccataaactaacagaa 260  Q
    ||||            |||| ||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||||    
T  5146343 ctcc------------aaaactcaacataatcacca-aaactcataaaactgactcaaatcatcacataaatcaccataaacaaacagaa 5146267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 75 - 260
Target Start/End: Original strand, 27976964 - 27977142
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaaga-tcacaaaaat-atgaacatcaccaagaactcatgaacattcattc 172  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||| |||||||    ||||||| ||||||| || |  |    
T  27976964 tacaaaccctaatcctttctctctcataccaaatacagatcaaacataaaaaaaatcacaaaaattatgaacaatctcaagaacacatgaaccttgaccc 27977063  T
Q  173 tccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgtaatcaccataaactaacagaa 260  Q
    |          | | ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  27977064 tt---------tccaaaaaatcaatataatcaccacaaactcatcaaaccgactcaaatcatcacataatcaccataaactaacagaa 27977142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 17658047 - 17658107
Alignment:
Q  21 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcatactacaaac 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17658047 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcataccacaaac 17658107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 1478490 - 1478565
Alignment:
Q  339 gccaatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagat 414  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||||||||    
T  1478490 gccaatcagaccggattcaagtcggatcggagaatttcagcaagaaagaggtgcatccgagcttaaagtagtagat 1478565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 4505147 - 4505107
Alignment:
Q  404 aagtagtagatccggtcttctccgttttgaaaccgaaggta 444  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  4505147 aagtagtagatctagtcttctccgttttgaaaccgaaggta 4505107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 364 - 459
Target Start/End: Original strand, 17209865 - 17209960
Alignment:
Q  364 atcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaactt 459  Q
    ||||||| |||| | |||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17209865 atcggaggaatttagcaagaaggaagtgaatccgagcttaaagtagtagatccagtcttctccgttttgaaaccgaaggtaatttcactcaaactt 17209960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 16122739 - 16122700
Alignment:
Q  32 cgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16122739 cgcgtcagagtcagaaaacgggtcagattggtccccatca 16122700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 16149478 - 16149439
Alignment:
Q  32 cgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16149478 cgcgtcagagtcagaaaacgggtcagattggtccccatca 16149439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 444
Target Start/End: Complemental strand, 16911410 - 16911370
Alignment:
Q  404 aagtagtagatccggtcttctccgttttgaaaccgaaggta 444  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  16911410 aagtagtagatctagtcttctccgttttgaaaccgaaggta 16911370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 29080102 - 29080137
Alignment:
Q  36 tcagagtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29080102 tcagagtcagaaaacgggtcagattggtccccatca 29080137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 29080270 - 29080313
Alignment:
Q  190 aaatcaacataatcaccacaaactcataaaaccgactcaaatca 233  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||    
T  29080270 aaatcaacataaacaccacaaattcataaaaccaactcaaatca 29080313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 71
Target Start/End: Original strand, 29094861 - 29094896
Alignment:
Q  36 tcagagtcagaaaacgggtcagattggtccctatca 71  Q
    ||||||||||||||||||||||||||||||| ||||    
T  29094861 tcagagtcagaaaacgggtcagattggtccccatca 29094896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 16122565 - 16122521
Alignment:
Q  189 aaaatcaacataatcaccacaaactcataaaaccgactcaaatca 233  Q
    ||||||||||||| |||||||||  ||||||||| ||||||||||    
T  16122565 aaaatcaacataaacaccacaaatccataaaaccaactcaaatca 16122521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 16149304 - 16149260
Alignment:
Q  189 aaaatcaacataatcaccacaaactcataaaaccgactcaaatca 233  Q
    ||||||||||||| |||||||||  ||||||||| ||||||||||    
T  16149304 aaaatcaacataaacaccacaaatccataaaaccaactcaaatca 16149260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 23027331 - 23027234
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaactt 459  Q
    ||||||||| |||| | ||| || |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23027331 ggatcggaggaatttagcaaaaaggaagtgaatccgagcttaaagtagtagatccagtcttctccgttttgaaaccgaaggtaatttcactcaaactt 23027234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 27062194 - 27062254
Alignment:
Q  21 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcatactacaaac 81  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27062194 cactgttcacacgcgtcagagtcagaaaacgggtcagattggtccctatcataccacaaac 27062254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 23635720 - 23635795
Alignment:
Q  339 gccaatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagat 414  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||| | ||| ||| ||||||||||||||||||    
T  23635720 gccaatcagaccggattcaagtcggatcggagaatttcagcaagaaaaaggtgcatccgagcttaaagtagtagat 23635795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 23837172 - 23837097
Alignment:
Q  339 gccaatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagat 414  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||| | ||| ||| ||||||||||||||||||    
T  23837172 gccaatcagaccggattcaagtcggatcggagaatttcagcaagaaaaaggtgcatccgagcttaaagtagtagat 23837097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 75 - 138
Target Start/End: Original strand, 23982948 - 23983013
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaa--aaagatcacaaaaat 138  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  23982948 tacaaaccctaatcctttctctctcataccaaatacagatcaaacacaaagaaaaatcacaaaaat 23983013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1380 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 342 - 454
Target Start/End: Original strand, 1192 - 1304
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| ||| |||||||||  ||||||||| |||  | |||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||    
T  1192 aatcggactggattcgagctggatcggaggaatctagcaagaaggaagtgaatccgagcttaaagtaatagatccggtcttcttcgttttgaaaccgaag 1291  T
Q  442 gtaatttcactca 454  Q
    |||||||||||||    
T  1292 gtaatttcactca 1304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1380; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 887 - 927
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  887 acgcgtcagagtcagaaaacgggtcagattggtccctatca 927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0871 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 459
Target Start/End: Original strand, 263 - 380
Alignment:
Q  342 aatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaag 441  Q
    |||| ||| |||||||||   |||||||| |||| | |||||| |||||||||| |||||||||||||||||||| | |||||| | |||||||||||||    
T  263 aatcggacaggattcgagctagatcggaggaatttagcaagaaggaagtgaatccgagcttaaagtagtagatccagacttctcagatttgaaaccgaag 362  T
Q  442 gtaatttcactcaaactt 459  Q
    ||||||||||||||||||    
T  363 gtaatttcactcaaactt 380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 362 - 459
Target Start/End: Complemental strand, 6584497 - 6584400
Alignment:
Q  362 ggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttcactcaaactt 459  Q
    ||||||||| |||| | |||||| |||||||||| |||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||    
T  6584497 ggatcggaggaatttagcaagaaggaagtgaatccgagcttaaagtagtagatccagacttctctgatttgaaaccgaaggtaatttcactcaaactt 6584400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 75 - 170
Target Start/End: Complemental strand, 31209643 - 31209543
Alignment:
Q  75 tacaaaccctaatcctttctctctgataccaaatacagatcaaacacaaaaagatcaca---aaaatatgaacatcaccaaga--actcatgaacattca 169  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||   |||| |||||||||||||| |  ||||||||| |||||    
T  31209643 tacaaaccctaatcctttctctctcatacaaaatacagatcaaacacaaaaaaatcacaaagaaaagatgaacatcaccaacaacactcatgaatattca 31209544  T
Q  170 t 170  Q
    |    
T  31209543 t 31209543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 379 - 449
Target Start/End: Complemental strand, 36254202 - 36254132
Alignment:
Q  379 caagaaagaagtgaatcggagcttaaagtagtagatccggtcttctccgttttgaaaccgaaggtaatttc 449  Q
    |||||| |||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  36254202 caagaaggaagtgaatccgagcttaaagtagtagatacagtcttctccgttttaaaaccgaaggtaatttc 36254132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 6584872 - 6584832
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6584872 acgcgtcagagtcagaaaacgggtcagattggtccctatca 6584832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 23091054 - 23091135
Alignment:
Q  90 tttctctctgataccaaatacagatcaaacacaaaaagatcacaaaaatatgaacatcaccaaga--actcatgaacattcat 170  Q
    ||||||||| || |||||||| ||||||| || |||| ||||||||||||||||||||||||| |  ||||||||| ||||||    
T  23091054 tttctctctcattccaaatacggatcaaataccaaaa-atcacaaaaatatgaacatcaccaacaacactcatgaatattcat 23091135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 260
Target Start/End: Complemental strand, 33308767 - 33308591
Alignment:
Q  76 acaaaccctaatcctttctctctgataccaaatacagatcaaa-cacaaaaagatcacaaaaata----tgaacatcaccaagaactcatgaacattcat 170  Q
    ||||||||||||||||||||||| ||||  ||||||||||||| ||| |||| ||||| |||| |    |||||||||||||||||| ||||||||||||    
T  33308767 acaaaccctaatcctttctctctcatacagaatacagatcaaaacaccaaaa-atcacgaaaaaaaggatgaacatcaccaagaacttatgaacattcat 33308669  T
Q  171 tctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcacgt-aatcaccataaactaacagaa 260  Q
    |||||| |||            ||||||||||||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||||    
T  33308668 tctccaaaac------------tcaacataatcacca-aaactcataaaactgactcaaatcatcacataaatcaccataaacaaacagaa 33308591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1547 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold1547
Description:

Target: scaffold1547; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 414
Target Start/End: Original strand, 18 - 93
Alignment:
Q  339 gccaatcagaccggattcgagtcggatcggagaaattcaacaagaaagaagtgaatcggagcttaaagtagtagat 414  Q
    |||||||||||||||||| ||||||||||||||| |||| ||||||||| ||| ||| ||||||||||||||||||    
T  18 gccaatcagaccggattcaagtcggatcggagaatttcagcaagaaagaggtgcatccgagcttaaagtagtagat 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 155 - 215
Target Start/End: Original strand, 30633 - 30693
Alignment:
Q  155 actcatgaacattcattctccataacaccttctaaaaatcaacataatcaccacaaactca 215  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||    
T  30633 actcatgaacattcatactccataaaaccttccaaaaatcaacataatcaccataaactca 30693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 30216 - 30140
Alignment:
Q  161 gaacattcattctccataacaccttctaaaaatcaacataatcaccacaaactcataaaaccgactcaaatcatcac 237  Q
    |||||||||| ||||||||||||||| ||||||||| |||||||||| ||||||| | | || ||| ||||||||||    
T  30216 gaacattcatactccataacaccttccaaaaatcaatataatcaccataaactcacagagccaacttaaatcatcac 30140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 13725 - 13765
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13725 acgcgtcagagtcagaaaacgggtcagattggtccctatca 13765  T

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Target: scaffold0046 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 36167 - 36207
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36167 acgcgtcagagtcagaaaacgggtcagattggtccctatca 36207  T

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Target: scaffold0046; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 61973 - 62013
Alignment:
Q  31 acgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  61973 acgcgtcagagtcagaaaacgggtcagattggtccctatca 62013  T

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Target: scaffold0047 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 81567 - 81606
Alignment:
Q  32 cgcgtcagagtcagaaaacgggtcagattggtccctatca 71  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  81567 cgcgtcagagtcagaaaacgagtcagattggtccctatca 81606  T

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Target: scaffold0455 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 5632 - 5596
Alignment:
Q  224 actcaaatcatcacgtaatcaccataaactaacagaa 260  Q
    |||||||||||||| |||||||||||||| |||||||    
T  5632 actcaaatcatcacataatcaccataaaccaacagaa 5596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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