View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_high_5 (Length: 415)
Name: NF14663_high_5
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 386
Target Start/End: Complemental strand, 45611967 - 45611629
Alignment:
| Q |
54 |
atcccttatatttcatcaaattattagtgatctattgaggtgtcaagaccacaatgtctttggnnnnnnn--catatgcagacactaac----ataaaca |
147 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| |
|
|
| T |
45611967 |
atcccttatatttcctcaaattattagtgatctattgaggtgtcaagaccacaatgtctttggtttttttttcatatgtagacactaactaacataaaca |
45611868 |
T |
|
| Q |
148 |
tgagaaaaattggcttttgcgaaacttgttgtgatatcttcggtaatggaagccacatttgattctaaacacggaaattttcgacctcctgagtttccta |
247 |
Q |
| |
|
|||| ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| || | ||||||||| ||||||| |
|
|
| T |
45611867 |
tgaggaaaattgacttttctgaaacttgttgtgatatcttcggtaatagaagccacatttgattttaaacattgaaaattccaacctcctgaatttccta |
45611768 |
T |
|
| Q |
248 |
gcagatcgtgttacaactttcttgagacggacaaaagagcctttgattctctcagaaaagctcttctttctactaaattgatagcttctaagaaacaatt |
347 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45611767 |
gcagatcgtattacaactttcctgagacggacaaaagagcctttgattctctcggaaaagctcttctttctaataaattgatagcttctaagaaacaatt |
45611668 |
T |
|
| Q |
348 |
gcctcttctccatcaatgtatagttttgctgctcatgag |
386 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
45611667 |
gcctcttctccatcaatgtataattatgctgctcatgag |
45611629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 131 - 386
Target Start/End: Complemental strand, 45609553 - 45609298
Alignment:
| Q |
131 |
agacactaacataaacatgagaaaaattggcttttgcgaaacttgttgtgatatcttcggtaatggaagccacatttgattctaaacacggaaattttcg |
230 |
Q |
| |
|
||||||||| ||||||| ||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |||| || | |
|
|
| T |
45609553 |
agacactaatataaacacgaggaaaattggcttttccgaaacttattgtgatatcttcggtaatagaagccacatttgattttaaacacagaaaattcca |
45609454 |
T |
|
| Q |
231 |
acctcctgagtttcctagcagatcgtgttacaactttcttgagacggacaaaagagcctttgattctctcagaaaagctcttctttctactaaattgata |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45609453 |
acctcctgagtttcctagcagatcgtattacaacttttctgagacggacaaaagagcctttgattctctcggaaaagctcttctttctactaaattgata |
45609354 |
T |
|
| Q |
331 |
gcttctaagaaacaattgcctcttctccatcaatgtatagttttgctgctcatgag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || || |||||||||| |
|
|
| T |
45609353 |
gcttctaagaaacaattgcctcttctccatcaatgtataattatggtgctcatgag |
45609298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 36895409 - 36895369
Alignment:
| Q |
39 |
atgtaattacattcaatcccttatatttcatcaaattatta |
79 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
36895409 |
atgtgattacattcaatcacttatattttatcaaattatta |
36895369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University