View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_high_7 (Length: 395)
Name: NF14663_high_7
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_high_7 |
 | |
|
| [»] scaffold0018 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0018 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 4 - 395
Target Start/End: Original strand, 139245 - 139635
Alignment:
| Q |
4 |
aaagaaaagagctgaaagcgcaacgagcacagcgaagcgagagtccctaccatttgggcttggcccaattcgtttgttaaattatgacttggaaggttgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
139245 |
aaagaaaagagctgaaagcgcaacgagcacagcgaagcgagagtccctaccatt-gggcttggcccaattcgtttgttaaattatgactaggaaggttgt |
139343 |
T |
|
| Q |
104 |
ggtgcatggtcgaaacctcctgtaatacggttcatgggtaaacttataatctggactgtcgtatttaaacaaaaatgtgtactttaaacctcaatattat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
139344 |
ggtgcatggtcgaaacctcctgtaatacggttcatgggtaaacttctaatctggaccgtagtatttaaacaaaaatgtgtactttaaacctcaatattat |
139443 |
T |
|
| Q |
204 |
ttaaaagagaactacaatagctactttgttgaaacgtaagtacaattggtcgaacttggtaatcaatcattgtgttctggtaaatttatttatctgcttt |
303 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
139444 |
ttaaaagaaaactataatagctactttgttgaaacgtaagtacaattgatcgaacttggtaatcaatcactgtgttctggtacatttatttatctgcttt |
139543 |
T |
|
| Q |
304 |
ctttagagtcatatttgttattctaacaaatattttcactcttttataaatatagttatggatctttcacaaagaaaccaagtgcatgccat |
395 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
139544 |
cttcagagtcatatttgttattctaacaaatattttcactctttgataaatatagttatggatctctcacaaagaaaccaagtgcatgccat |
139635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 388
Target Start/End: Original strand, 24896906 - 24896950
Alignment:
| Q |
344 |
cttttataaatatagttatggatctttcacaaagaaaccaagtgc |
388 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
24896906 |
cttttataaatatagttatggatctctcacggagaaaccaggtgc |
24896950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University