View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_high_8 (Length: 389)
Name: NF14663_high_8
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 44467612 - 44467237
Alignment:
| Q |
1 |
gacttcacagttagaattaggaatggcgacacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacaca |
100 |
Q |
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| T |
44467612 |
gacttcacagttagaattaggaatggcgacacgttccttcaatgcgctcgcactctttaatcactctccacaaccacagacttataacaacaataacaca |
44467513 |
T |
|
| Q |
101 |
gttgctgcatctttgtctatatctcagcaacattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaggatgatg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44467512 |
gttgctgcatctttgtctgtatctcagcaacattcctactccaacagcaatagtgtggattataataactcctccctctacatggattcaaaagatgatg |
44467413 |
T |
|
| Q |
201 |
ctacaaatcctaatttgtggcttcagtgcccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467412 |
ctacaaatcctaatttgtggcttcagtgcccttacacaaataataatagcagttcaatagcaatgcaacctcataaattggttacctcagagtcgcagcc |
44467313 |
T |
|
| Q |
301 |
actatcatctgtccaacaaggagttgttgaagataattatgatgagatgcattcatttttcgatacagttgatgat |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44467312 |
actatcatctgtccaacaaggagttgttgaagataattatgatgagatgcattcatttttcgatacagttgatgat |
44467237 |
T |
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