View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_high_9 (Length: 384)
Name: NF14663_high_9
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 210 - 370
Target Start/End: Complemental strand, 37791702 - 37791543
Alignment:
| Q |
210 |
ccagttgaatggtgtgaagttagttaacatttacttctattaaacaacaccaaatgtgaatgtttcgtttcttatattcaacatcggagtaacattcagt |
309 |
Q |
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| T |
37791702 |
ccagttgaatggtgtgaagttagttaacatttacttc-attaaacagcaccaaatgtgaatgttttgtttcttatattcaacatcggagtaacattcagt |
37791604 |
T |
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| Q |
310 |
tagataacaaataatcatggcactaggaaagtttcacatatagagtggtggaaaaattaat |
370 |
Q |
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| T |
37791603 |
tagataacaaataatcatggcactaggaaagtttcacatatagagtggtggaaaaattaat |
37791543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 37791903 - 37791777
Alignment:
| Q |
9 |
gaatataaatcaaatcatataaattcaaactaatnnnnnnntgatagttaatttcatttaattttcttcatatggataaaaaataaatttatttcctaaa |
108 |
Q |
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|||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37791903 |
gaatataagtcaaatcatataaattcaagctaataaaaaaatgatagttaatttcatttaattttcttcatatggataaaaaataaatttatttcctaaa |
37791804 |
T |
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| Q |
109 |
ctactctttatcgaaactttttgcatg |
135 |
Q |
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| T |
37791803 |
ctactctttatcgaaactttttgcatg |
37791777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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