View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_low_1 (Length: 516)
Name: NF14663_low_1
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_1 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 21 - 516
Target Start/End: Complemental strand, 3916736 - 3916250
Alignment:
| Q |
21 |
cccaattggatcacaccatatttctattcattcattagttattctatcctttaacttaattactttctatttattccttatgtaactaaaaactgctcaa |
120 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| | |||| |
|
|
| T |
3916736 |
cccaattggatcacactgtatttctattcattcattagttattctatcctttaacataattactttctatttattcctcatgtaacaaaaagcatgtcaa |
3916637 |
T |
|
| Q |
121 |
ccttaaacaacataagtaaaaggaaactatgatccttaat-ctttaaaaccatggttgcaacttgcaacacgtttttcagctacctt-aattaacttttg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
3916636 |
ccttaaacaacataagtaaaaggaaactaaaatccttaatactttaaaaccatggtttcatcttgcaacacgtttttcagctactttcaattaagctttg |
3916537 |
T |
|
| Q |
219 |
ctaatatcaatttcctcaagataaggtaaatttaattcacttccattgtaagaaatcaatagttctcatcactctagccttaagttctataaattggagt |
318 |
Q |
| |
|
||| ||||||||||| | ||||| |||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3916536 |
ttaaaatcaatttccttacgataatgtaattttaattcacttctattttaggaaatcaatagttctcatcactctagccttaagttctataaattggagt |
3916437 |
T |
|
| Q |
319 |
gattttggagacagtttattcatacaaacacaagagnnnnnnnnnnnnnnnnncttcaagagtaacttatatacactatggcaaaacccatcactggttc |
418 |
Q |
| |
|
||||||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3916436 |
gattttggagaaaatttattcatacaaacacgaga-----------aaaaaaacttcaagagtaacttatatacactatggcaaaaaccatcactggttc |
3916348 |
T |
|
| Q |
419 |
acttgttttagttctccttgttacggcgattctgaacggacacaccgaagctgccggtagaggagctgaaccaccaaaggatggaagtgtttacgaac |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3916347 |
acttgttttagttctccttgttacggcgattctgaacggccacatcgaagctgccggtagaggagctgaaccaccaaaggatggaagtgtttacgaac |
3916250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 454
Target Start/End: Original strand, 5398543 - 5398604
Alignment:
| Q |
390 |
tacactatggcaaaacccatcactggttcacttgttttagttctccttgttacggcgattctgaa |
454 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||| |||||||||||| |||||||| |||| |
|
|
| T |
5398543 |
tacactatggcaaaatcca---ctgcttcacttgttttggttctccttgttgcggcgattttgaa |
5398604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University