View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_low_11 (Length: 390)
Name: NF14663_low_11
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 47908798 - 47908533
Alignment:
| Q |
1 |
tttggcttcgttcaaacactaaccgtcctctatgtcgctcccttattggctgtcatctctgttgtttacttacgtccatcgccaacaaggacggacgggt |
100 |
Q |
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| T |
47908798 |
tttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtcatctctgttgtttacttacatccatcgccaacaaggacggacgggt |
47908699 |
T |
|
| Q |
101 |
ggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacagaacaccagtttctcgactgagtggatcatcgagcc |
200 |
Q |
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| T |
47908698 |
ggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacagaacaccagtttctcgacagagtggatcatcgagcc |
47908599 |
T |
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| Q |
201 |
agctgacgtgtttgggtctagaggtgttgtttcgccggagcaatggacatagggttaattgctatc |
266 |
Q |
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| T |
47908598 |
aactgacgtgtttggatctagaggtgttgtttcgccggagcaatggacatagggttaattgttatc |
47908533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 47906026 - 47905766
Alignment:
| Q |
1 |
tttggcttcgttcaaacactaaccgtcctctatgtcgctcccttattggctgtcatctctgttgtttacttacgtccatcgccaacaaggacggacgggt |
100 |
Q |
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| T |
47906026 |
tttggcttcgttcaaacactaactgtcctctatgtcgctcccttatttgctgtcatctctgttgtttacttacatccatcgccaacaaggacggacgggt |
47905927 |
T |
|
| Q |
101 |
ggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacagaacaccagtttctcgactgagtggatcatcgagcc |
200 |
Q |
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| T |
47905926 |
ggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacagaacaccagtttctcgact------------gagcc |
47905839 |
T |
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| Q |
201 |
agctgacgtgtttgggtctagaggtgttgtttcgccggagcaatggacatagggttaattgctatccaagtac |
273 |
Q |
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| T |
47905838 |
agctgacgtgtttggatctagaggtgttgtttcgccggagcaatggacatagggttaattgctatccaagtac |
47905766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 287 - 388
Target Start/End: Complemental strand, 47905714 - 47905613
Alignment:
| Q |
287 |
attaattataaattgggaaatcgccactgtgattgatgtttattatattaaggttacttttatgtgagttattatatcatgaagacatatgtttcatctc |
386 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
47905714 |
attagttataaattgggaaatcgccactgtgattgatgtttattatattaaggttacttttatgtgagttattatatcatgaagacataagtttcatttc |
47905615 |
T |
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| Q |
387 |
tg |
388 |
Q |
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|| |
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| T |
47905614 |
tg |
47905613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 39403157 - 39403075
Alignment:
| Q |
83 |
caacaaggacggacgggtggactttcccgtcttacccccttattcatttgcttctgagcgaagcttgtagtcgaagaggacag |
165 |
Q |
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| T |
39403157 |
caacaaggacggacgggtggactttccggtcttacccccttattcatttgcttctgagtgaagctcgtcgccggagaggacag |
39403075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 273
Target Start/End: Complemental strand, 39402985 - 39402936
Alignment:
| Q |
224 |
gtgttgtttcgccggagcaatggacatagggttaattgctatccaagtac |
273 |
Q |
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| T |
39402985 |
gtgttgtttcgccggagcgatggacaaagggttaattgctatccgagtac |
39402936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 212
Target Start/End: Complemental strand, 39403030 - 39402981
Alignment:
| Q |
163 |
cagaacaccagtttctcgactgagtggatcatcgagccagctgacgtgtt |
212 |
Q |
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||||||||| ||||||||| |||| |||||||||||||| |||||||||| |
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| T |
39403030 |
cagaacaccggtttctcgattgaggggatcatcgagccaactgacgtgtt |
39402981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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