View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_low_17 (Length: 297)
Name: NF14663_low_17
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 279
Target Start/End: Complemental strand, 36524820 - 36524547
Alignment:
| Q |
10 |
acttagacagcttgttgagagcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagc |
109 |
Q |
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| T |
36524820 |
acttagacagcttgttaagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagc |
36524721 |
T |
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| Q |
110 |
aaacttcagtgcctctagaaattcactcc----cattctactttccgccagttgcctagctcgcacagcctcgtccttgttgcactccattagcagcact |
205 |
Q |
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||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36524720 |
aaacttcagtgcctctacaaattcacccctttgcattctactttccgccagttgcctagctcgcacagcctcgtccttgttgcactccattagcagcact |
36524621 |
T |
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| Q |
206 |
atgtgttccacctaattgacacagaccaacgaaaggtaaaactaagccaactcatcactattctatgaaacacg |
279 |
Q |
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| T |
36524620 |
atgtgttccacctaattgacacagaccaacgaaaggtaaaactaagctaactcatcactattctatgaaacacg |
36524547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 36531157 - 36530963
Alignment:
| Q |
8 |
atacttagacagcttgttgagagcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgtta |
107 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||| |
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| T |
36531157 |
atacttagacagcttgttgagtgcagcattgtgaacctcacaaacagcaaggatctgagcaatgttttcaacatcagcatagagccttttggccttgtta |
36531058 |
T |
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| Q |
108 |
gcaaacttcagtgcctctagaaattcactcc----cattctactttccgccagttgcctagctcgcacagcctcgtccttgttgcactccattag |
198 |
Q |
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| T |
36531057 |
gcaaacttcagtgcatctacaaattcacccctttgcattttagtttctgccagttgcttagccttcacagcgtcatccttgttacactccattag |
36530963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 36552656 - 36552475
Alignment:
| Q |
21 |
ttgttgagagcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtg |
120 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
36552656 |
ttgttgagtgcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacagctttttggccttgttagcaaacttcagtg |
36552557 |
T |
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| Q |
121 |
cctctagaaattcac----tcccattctactttccgccagttgcctagctcgcacagcctcgtccttgttgcactccattag |
198 |
Q |
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| T |
36552556 |
cctctacaaattcaccaatttgcatcttagtttccgccagttgctttaccctcacagcctcgtctttgttgcactccattag |
36552475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 198
Target Start/End: Original strand, 26306204 - 26306376
Alignment:
| Q |
30 |
gcagcattgtgaacctcacaaacagtaaggatctgagcaatgttttcaacatcagcatacatcgttttggccttgttagcaaacttcagtgcctctagaa |
129 |
Q |
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|||||| |||||||||||||||| | ||||| ||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| |||| | |
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| T |
26306204 |
gcagcaatgtgaacctcacaaactgcaaggacctgagcaatgttttccacaccagcatacagatttttggcctttttagcaaacttcagtgcatctacga |
26306303 |
T |
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| Q |
130 |
attcactcc----cattctactttccgccagttgcctagctcgcacagcctcgtccttgttgcactccattag |
198 |
Q |
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|||||| || |||| || ||||||||||||| |||| | |||||||| |||||||||||||||||||| |
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| T |
26306304 |
attcacccctttgcattttagtttccgccagttgtttagcccttacagcctcatccttgttgcactccattag |
26306376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 36530870 - 36530802
Alignment:
| Q |
200 |
agcactatgtgttccacctaattgacacagaccaacgaaaggtaaaactaagccaactcatcactattc |
268 |
Q |
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| T |
36530870 |
agcactttgttttccacctaattgacacagacccagcaaagataaaattaagccagctcatcactattc |
36530802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 36552415 - 36552351
Alignment:
| Q |
212 |
tccacctaattgacacagaccaacgaaaggtaaaactaagccaactcatcactattctatgaaaca |
277 |
Q |
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| T |
36552415 |
tccacctaattgacacaaaccaagcaaagataaaattaagccaacacatcact-ctctatgaaaca |
36552351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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