View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14663_low_2 (Length: 515)

Name: NF14663_low_2
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14663_low_2
NF14663_low_2
[»] chr6 (13 HSPs)
chr6 (1-501)||(31564316-31564826)
chr6 (242-406)||(33416366-33416536)
chr6 (7-205)||(33385472-33385670)
chr6 (7-205)||(33259752-33259959)
chr6 (363-492)||(33385707-33385837)
chr6 (76-182)||(24631864-24631970)
chr6 (418-477)||(33281320-33281376)
chr6 (9-65)||(9165360-9165418)
chr6 (435-489)||(33416538-33416592)
chr6 (418-477)||(33301947-33302003)
chr6 (99-174)||(281808-281881)
chr6 (7-68)||(29274300-29274363)
chr6 (7-82)||(2034496-2034572)
[»] chr5 (5 HSPs)
chr5 (243-397)||(30653203-30653360)
chr5 (70-135)||(30653373-30653438)
chr5 (7-116)||(11684359-11684468)
chr5 (124-175)||(11457158-11457209)
chr5 (7-68)||(32059660-32059722)
[»] scaffold0428 (2 HSPs)
scaffold0428 (7-205)||(3840-4047)
scaffold0428 (418-477)||(12876-12932)
[»] chr2 (7 HSPs)
chr2 (360-489)||(17443374-17443503)
chr2 (140-205)||(17443537-17443602)
chr2 (100-177)||(14299588-14299663)
chr2 (7-68)||(7103554-7103615)
chr2 (7-35)||(3102629-3102657)
chr2 (7-68)||(18962109-18962172)
chr2 (159-211)||(43199930-43199982)
[»] chr8 (5 HSPs)
chr8 (99-177)||(13000381-13000457)
chr8 (99-177)||(30191098-30191174)
chr8 (34-120)||(10079082-10079168)
chr8 (71-120)||(30389108-30389157)
chr8 (7-82)||(5290577-5290649)
[»] chr3 (3 HSPs)
chr3 (99-175)||(43115093-43115167)
chr3 (99-177)||(37273171-37273247)
chr3 (102-198)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (62-175)||(3468614-3468725)
chr7 (7-116)||(26935573-26935684)
chr7 (7-68)||(33894559-33894621)
chr7 (99-174)||(39345508-39345581)
[»] scaffold0024 (1 HSPs)
scaffold0024 (9-82)||(21335-21410)
[»] chr1 (5 HSPs)
chr1 (126-177)||(15581316-15581367)
chr1 (7-50)||(44207707-44207750)
chr1 (102-177)||(28837002-28837075)
chr1 (71-115)||(30014095-30014139)
chr1 (12-68)||(44422642-44422698)
[»] chr4 (4 HSPs)
chr4 (10-80)||(55437345-55437415)
chr4 (100-175)||(9843212-9843285)
chr4 (10-50)||(32920489-32920529)
chr4 (7-60)||(47970254-47970309)
[»] scaffold0311 (1 HSPs)
scaffold0311 (99-174)||(10577-10650)


Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 31564826 - 31564316
Alignment:
Q  1 taaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacgg 100  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  31564826 taaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagcttttctagacaacatatgg 31564727  T
Q  101 aaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaat 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31564726 aaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatgagtgtataagttcaaat 31564627  T
Q  201 acatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acatgtaaaaattgaaataca 294  Q
    | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      |||||||||||||||||||||    
T  31564626 atatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacatgtaaaaattgaaataca 31564527  T
Q  295 tgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatgaaattgaaaccattactc 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  31564526 tgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatgaaattgaaaccattactc 31564427  T
Q  391 gagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgta 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564426 gagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgta 31564327  T
Q  491 ctaccacaggt 501  Q
    |||||||||||    
T  31564326 ctaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  242 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 339  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  340 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 406  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 33385472 - 33385670
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaat 104  Q
    |||| |||||||||| ||||||||| |||  |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || |||||     
T  33385472 tgctgatgtataagcaatttttataacaaaagataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaa 33385569  T
Q  105 aagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacat 204  Q
    |||||||||||||||||| ||||||||||||  | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| |||    
T  33385570 aagctgaaaacaacttttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcat 33385669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 33259752 - 33259959
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata-------agcgattttcataagcttttctagacaacata 97  Q
    ||||||||||||||||||||||||| |||  |||||| |||||||||||||||||||||||       ||| ||||||||||||||||||| |||  |||    
T  33259752 tgcttatgtataagctatttttataacaaaagataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtata 33259851  T
Q  98 cggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttca 197  Q
     | |||   |||||||||| ||||| ||||||||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||    
T  33259852 tgtaaaatggctgaaaacagcttttatggacatgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttca 33259951  T
Q  198 aatacatc 205  Q
    ||||||||    
T  33259952 aatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 492
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  363 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 461  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  462 aattgcaacttcttcatcttcaacttgtact 492  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  76 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 175  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  176 ctaatat 182  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  418 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 477  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 9165360 - 9165418
Alignment:
Q  9 cttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 65  Q
    ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165360 cttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  435 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 489  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  418 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 477  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 174  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 29274363 - 29274300
Alignment:
Q  7 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 68  Q
    |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274363 tgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 2034572 - 2034496
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttcctataagcgattttcataagct 82  Q
    |||||||||||||||| |||||| | ||| |||||||| |||||| |||  |||| |||||||  ||||||||||||    
T  2034572 tgcttatgtataagctgtttttacaacaaagataaaataaagtcaaactactttcatataagcttttttcataagct 2034496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 243 - 397
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  243 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 342  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  343 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 397  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  70 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 135  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 11684359 - 11684468
Alignment:
Q  7 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataa 106  Q
    |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || | | |||||||||||    
T  11684359 tgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagagcttacggaaataa 11684458  T
Q  107 gctgaaaaca 116  Q
    | ||||||||    
T  11684459 gttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  124 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 175  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 32059722 - 32059660
Alignment:
Q  7 tgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 68  Q
    |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059722 tgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 7 - 205
Target Start/End: Original strand, 3840 - 4047
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata-------agcgattttcataagcttttctagacaacata 97  Q
    ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||       ||| |||||||||||||||||||||||  |||    
T  3840 tgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatatgctataagctattttcataagcttttctagacagtata 3939  T
Q  98 cggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttca 197  Q
     | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||    
T  3940 tgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttccaaacagtctcacaagtgcttatatcaatatataagttca 4039  T
Q  198 aatacatc 205  Q
    ||||||||    
T  4040 aatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 477
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  418 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 477  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 360 - 489
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  360 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 459  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  460 gcaattgcaacttcttcatcttcaacttgt 489  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  140 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 205  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  100 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  7 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 68  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 35
Target Start/End: Original strand, 3102629 - 3102657
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa 35  Q
    |||||||||||||||||||||||||||||    
T  3102629 tgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 18962172 - 18962109
Alignment:
Q  7 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 68  Q
    ||||||||||| ||||||||||||| |  |||||||||| |||| | ||||||||| |||||||    
T  18962172 tgcttatgtattagctatttttataacaaaagataaaataaagttaaactgttttcatataagc 18962109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 43199930 - 43199982
Alignment:
Q  159 aaacagtctcacaagtgctaatatgactgtataagttcaaatacatcaatcca 211  Q
    ||||||||||||||||||| |||||| |  ||||||||||||| || ||||||    
T  43199930 aaacagtctcacaagtgcttatatgagtagataagttcaaataaatgaatcca 43199982  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 120
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  34 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 120  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  71 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 120  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 5290577 - 5290649
Alignment:
Q  7 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 82  Q
    |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290577 tgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 175  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 177
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  102 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 198  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  62 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 161  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  162 cagtctcacaagtg 175  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 26935684 - 26935573
Alignment:
Q  7 tgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaat 104  Q
    ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | | | || ||||||    
T  26935684 tgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaagagcttatggaaat 26935585  T
Q  105 aagctgaaaaca 116  Q
    ||||||||||||    
T  26935584 aagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 33894559 - 33894621
Alignment:
Q  7 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 68  Q
    |||||||||||||||||||| |||| |  |||||||||| |||||| ||||||||| |||||||    
T  33894559 tgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcatataagc 33894621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 39345508 - 39345581
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 174  Q
    ||||||||||||||| |||||| ||  ||||||||||    ||||||||| |||||| | ||||||||||||||||    
T  39345508 ggaaataagctgaaagcaacttatg--gacatgtcataaactgtttccatgaactctaccaaacagtctcacaagt 39345581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  9 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 82  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  126 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 44207707 - 44207750
Alignment:
Q  7 tgcttatgtataagctatttttatagcaagataaaatgaagtca 50  Q
    ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207707 tgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 28837075 - 28837002
Alignment:
Q  102 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 177  Q
    ||||||||||||||| ||| ||||  ||||||||| | |||||   |||| ||||| |||||||||||||||||||    
T  28837075 aataagctgaaaacagcttatgtg--catgtcattagctgttttggttaagtcttctaaacagtctcacaagtgct 28837002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 30014139 - 30014095
Alignment:
Q  71 ttttcataagcttttctagacaacatacggaaataagctgaaaac 115  Q
    |||||||||||| | ||||| ||| ||||||||||||||||||||    
T  30014139 ttttcataagctatgctagagaacttacggaaataagctgaaaac 30014095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 44422642 - 44422698
Alignment:
Q  12 atgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 68  Q
    |||||||||||||||||||| || |||||||| |  ||| ||||||||| |||||||    
T  44422642 atgtataagctatttttataacatgataaaataatctcaaactgttttcatataagc 44422698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  10 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 80  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 9843285 - 9843212
Alignment:
Q  100 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 175  Q
    |||||||||||||||||||  || |||| |||| ||| ||||||| | | | ||||| ||||||||||||||||||    
T  9843285 gaaataagctgaaaacaac--ttatggatatgtgattagttgttttcttaatctctttgaaacagtctcacaagtg 9843212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 32920529 - 32920489
Alignment:
Q  10 ttatgtataagctatttttatagcaagataaaatgaagtca 50  Q
    ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920529 ttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 47970254 - 47970309
Alignment:
Q  7 tgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 60  Q
    |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970254 tgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 10650 - 10577
Alignment:
Q  99 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 174  Q
    ||||||||||||||||||||  || ||||||||||||| ||||||| ||| | || |   ||||||||||||||||    
T  10650 ggaaataagctgaaaacaac--ttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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