View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_low_20 (Length: 274)
Name: NF14663_low_20
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 37 - 256
Target Start/End: Complemental strand, 28046989 - 28046770
Alignment:
| Q |
37 |
gtagatataagcttaatggagagattcaaattcattttgattgataaaaagataaaatgaaaattattacaatttactctttaaatagagcttaggacaa |
136 |
Q |
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| T |
28046989 |
gtagatataagcttaatggagagattcaaattcattttgattgataaaaagataaaatgaaaattattacactttactctttaaatagagcttaggacaa |
28046890 |
T |
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| Q |
137 |
gattaacaaataaaaataaaatgattgtttctttaactttcttttaatataaaaatagaagtaatttcaaactagtttttgactgaagaaggtttgccac |
236 |
Q |
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| T |
28046889 |
gattaacaaataaaaataaaatgattgtttctttaactttcttttaatataaaaatagaagtaatttcaaactagtttttgactgaagaaggtttgccac |
28046790 |
T |
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| Q |
237 |
taatgagtaatgagttttgt |
256 |
Q |
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| T |
28046789 |
taatgagtaatgacttttgt |
28046770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 28034750 - 28034681
Alignment:
| Q |
61 |
ttcaaattcattttgattgataaaaagataaaatgaaaattattacaatttactctttaaatagagctta |
130 |
Q |
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| T |
28034750 |
ttcaaattcattttgattgataaaaagataaactgaaaattattacaatttgctctttatgtagagctta |
28034681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 28074125 - 28074051
Alignment:
| Q |
64 |
aaattcattttgattgataaaaagataaaatgaaaattattacaatttactctttaaatagagcttaggacaaga |
138 |
Q |
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| T |
28074125 |
aaattcatattgattgataaaaagataaaatgaaaatgattgcaattttctctttctatagagcttaggaaaaga |
28074051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 27916397 - 27916344
Alignment:
| Q |
64 |
aaattcattttgattgataaaaagataaaatgaaaattattacaatttactctt |
117 |
Q |
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| T |
27916397 |
aaattcatattgattgataaaaagataaaattaaaatgattacaatttgctctt |
27916344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 28016991 - 28016910
Alignment:
| Q |
64 |
aaattcattttgattgataaaaagataaaatgaaaattattacaatttactctttaaatagagcttaggacaagattaacaa |
145 |
Q |
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||||| || |||||||| ||||||||||||||||||| ||| |||||| |||||| |||||| | |||| ||||| ||||| |
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| T |
28016991 |
aaattaatattgattgacaaaaagataaaatgaaaataattgcaatttgctctttctatagagatgaggaaaagatcaacaa |
28016910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 27933927 - 27933875
Alignment:
| Q |
92 |
aatgaaaattattacaatttactctttaaatagagcttaggacaagattaaca |
144 |
Q |
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| T |
27933927 |
aatgaaaatgattacactttactctttatatagagcttagaaaaagatcaaca |
27933875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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