View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14663_low_3 (Length: 505)

Name: NF14663_low_3
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14663_low_3
NF14663_low_3
[»] chr4 (12 HSPs)
chr4 (14-432)||(9937934-9938350)
chr4 (431-469)||(32280431-32280469)
chr4 (430-471)||(46393119-46393160)
chr4 (432-472)||(53133446-53133486)
chr4 (434-477)||(34119018-34119061)
chr4 (436-469)||(18371073-18371106)
chr4 (432-477)||(26740737-26740782)
chr4 (433-470)||(31217029-31217066)
chr4 (352-432)||(868754-868834)
chr4 (433-477)||(2554203-2554247)
chr4 (437-469)||(25064205-25064237)
chr4 (433-469)||(52355978-52356014)
[»] chr3 (3 HSPs)
chr3 (431-477)||(53287381-53287427)
chr3 (432-477)||(54362011-54362056)
chr3 (436-472)||(53683922-53683958)
[»] chr2 (11 HSPs)
chr2 (432-477)||(44966140-44966185)
chr2 (434-477)||(34504159-34504202)
chr2 (436-469)||(37028868-37028901)
chr2 (432-469)||(929006-929043)
chr2 (424-469)||(4762050-4762095)
chr2 (432-477)||(12972859-12972904)
chr2 (433-470)||(18734566-18734603)
chr2 (432-461)||(35327901-35327930)
chr2 (350-383)||(36802667-36802700)
chr2 (432-469)||(40500183-40500220)
chr2 (430-458)||(17696168-17696196)
[»] chr8 (3 HSPs)
chr8 (434-469)||(159232-159267)
chr8 (432-477)||(10361244-10361289)
chr8 (433-477)||(4993347-4993391)
[»] chr6 (5 HSPs)
chr6 (427-469)||(11753083-11753125)
chr6 (432-477)||(2557391-2557436)
chr6 (430-467)||(6383298-6383335)
chr6 (432-469)||(12622500-12622537)
chr6 (435-467)||(2588765-2588797)
[»] chr5 (7 HSPs)
chr5 (435-468)||(13719322-13719355)
chr5 (433-470)||(14576049-14576086)
chr5 (425-478)||(30873078-30873131)
chr5 (432-470)||(10020692-10020730)
chr5 (431-477)||(18334502-18334548)
chr5 (431-469)||(35075961-35075999)
chr5 (437-477)||(8233975-8234015)
[»] chr1 (8 HSPs)
chr1 (432-477)||(15280804-15280849)
chr1 (433-477)||(15279120-15279164)
chr1 (430-469)||(52413960-52413999)
chr1 (432-469)||(30058347-30058384)
chr1 (432-469)||(45069872-45069909)
chr1 (433-469)||(25901906-25901942)
chr1 (436-472)||(34711035-34711071)
chr1 (433-477)||(39275818-39275862)
[»] chr7 (2 HSPs)
chr7 (436-475)||(31418045-31418084)
chr7 (432-469)||(5989449-5989486)
[»] scaffold0657 (1 HSPs)
scaffold0657 (352-432)||(1150-1230)
[»] scaffold0014 (1 HSPs)
scaffold0014 (432-472)||(100155-100195)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 14 - 432
Target Start/End: Complemental strand, 9938350 - 9937934
Alignment:
Q  14 atactcaattcattttatcaccaatttggtggacaccacaaatactttcatgcacttccgctagggctatttaagcatcttcttcacatgagcatcatgc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||    
T  9938350 atactcaattcattttatcaccaatttggtggacaccacaaatactttcatgcacttccgctagggctatgtaagcatcttcttcacttaagcatcttgc 9938251  T
Q  114 taaagtttcatatgacaattgtttatacaactcatcaccaatgctcggtattattattatatgtgtgtgtgaaaatataagaacaacaacaagacatttc 213  Q
    ||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||| |||  |||  ||||    
T  9938250 taaagtttcatataaaaattgtttatacaacttatcaccaatgctcggtattattat---atgtgtgtgtgaaaatataagaacaccaaagagatttttc 9938154  T
Q  214 tttattgttttctttttctt-actttcgaaataataaagtctctaaaatacataattcgtttagctgagcattaaatacgaagtaatcatgataccctat 312  Q
    ||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9938153 tttattgttttctttttttttactttcgaaataaaaaagtctctaaaatacataattcgtttagctgaacattaaatacgaagtaatcatgataccctat 9938054  T
Q  313 taaacataaggaaagtatttgtagtgagactttactataaagtgggataacatcaaagcatatagattattgtgtggatagagtcatgattacatctcag 412  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||| |||||||||| |||||||||||| ||||||||     
T  9938053 taaacataaggaaagtatttgtagtgagactttactatgaagtgagatagcatcgaagcatatagactattgtgtgggtagagtcatgatcacatctcat 9937954  T
Q  413 aaatcatgaataaaaagtta 432  Q
    |||||||||||||| |||||    
T  9937953 aaatcatgaataaagagtta 9937934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 32280469 - 32280431
Alignment:
Q  431 tagggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32280469 tagggaaatgttaacttgtgcccttaagacataagttaa 32280431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 430 - 471
Target Start/End: Original strand, 46393119 - 46393160
Alignment:
Q  430 ttagggaaatgttaacttgtgcccttaagacataagttaatg 471  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  46393119 ttagggaaatgttaacttgtgtccttaaggcataagttaatg 46393160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Original strand, 53133446 - 53133486
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatga 472  Q
    ||||||||||||||||||||||||||| || ||||||||||    
T  53133446 agggaaatgttaacttgtgcccttaaggcacaagttaatga 53133486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Complemental strand, 34119061 - 34119018
Alignment:
Q  434 ggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||| ||||||||| |||||| |||||||||||||||    
T  34119061 ggaaatgttaatttgtgccctcaagacacaagttaatgattcaa 34119018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 18371073 - 18371106
Alignment:
Q  436 aaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||||||||| |||||||    
T  18371073 aaatgttaacttgtgcccttaagacacaagttaa 18371106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 26740737 - 26740782
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||||||||||| ||||||||| | |||||||| ||||    
T  26740737 agggaaatgttaacttgtgctcttaagacacacgttaatgaatcaa 26740782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 31217066 - 31217029
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaat 470  Q
    |||||||| |||||||||||||||||||| ||||||||    
T  31217066 gggaaatgctaacttgtgcccttaagacacaagttaat 31217029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 432
Target Start/End: Original strand, 868754 - 868834
Alignment:
Q  352 aagtgggataacatcaaagcatatagattattgtgtggatagagtcatgattacatctcagaaatcatgaataaaaagtta 432  Q
    |||||||||| ||| |||||||| ||| |||| ||| | |||| | ||||| |||||||| | |||||| |||||||||||    
T  868754 aagtgggatatcattaaagcatagagactattatgtaggtagactgatgatcacatctcacagatcatggataaaaagtta 868834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 2554247 - 2554203
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||| ||||||||||||||||| || |||||||||| ||||    
T  2554247 gggaaatgctaacttgtgcccttaaggcacaagttaatgaatcaa 2554203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 469
Target Start/End: Complemental strand, 25064237 - 25064205
Alignment:
Q  437 aatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||| |||||||||||||    
T  25064237 aatgttaacttgtgcccttgagacataagttaa 25064205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 52356014 - 52355978
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||||||| || ||||||||||    
T  52356014 gggaaatgttaacttgtgcccttgaggcataagttaa 52355978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 431 - 477
Target Start/End: Original strand, 53287381 - 53287427
Alignment:
Q  431 tagggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||||||||||||||||||| || |||||||||||||||    
T  53287381 tagggaaatgttaacttgtgcccttaagccacaagttaatgattcaa 53287427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 54362011 - 54362056
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||||||||||| || |||||||||| ||||    
T  54362011 agggaaatgttaacttgtgcccttaaggcacaagttaatgagtcaa 54362056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 472
Target Start/End: Original strand, 53683922 - 53683958
Alignment:
Q  436 aaatgttaacttgtgcccttaagacataagttaatga 472  Q
    ||||||||||||||||||||||| || ||||||||||    
T  53683922 aaatgttaacttgtgcccttaaggcacaagttaatga 53683958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 44966185 - 44966140
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||||||||||| || |||||||||||||||    
T  44966185 agggaaatgttaacttgtgcccttaaggcacaagttaatgattcaa 44966140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 34504159 - 34504202
Alignment:
Q  434 ggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||||||||||||||||||| |||||||||| ||||    
T  34504159 ggaaatgttaacttgtgcccttaagacacaagttaatgaatcaa 34504202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 469
Target Start/End: Original strand, 37028868 - 37028901
Alignment:
Q  436 aaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||||||||||||||||||    
T  37028868 aaatgttaacttgtgcccttaagacataagttaa 37028901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 929006 - 929043
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  929006 agggaaatgttaacttgtgtccttaagacacaagttaa 929043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 4762050 - 4762095
Alignment:
Q  424 aaaaagttagggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||| ||||||  |||||||||||||||||||||||| |||||||    
T  4762050 aaaaaattagggtcatgttaacttgtgcccttaagacacaagttaa 4762095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 12972904 - 12972859
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||| | ||||||||||||||||| || |||||||||||||||    
T  12972904 agggaaaagctaacttgtgcccttaaggcacaagttaatgattcaa 12972859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 18734603 - 18734566
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaat 470  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  18734603 gggaaatgttaacttgtgccattaagacacaagttaat 18734566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 461
Target Start/End: Complemental strand, 35327930 - 35327901
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagaca 461  Q
    ||||||||||||||||||||||||||||||    
T  35327930 agggaaatgttaacttgtgcccttaagaca 35327901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 36802700 - 36802667
Alignment:
Q  350 taaagtgggataacatcaaagcatatagattatt 383  Q
    |||||||||||||||| |||||||||||||||||    
T  36802700 taaagtgggataacattaaagcatatagattatt 36802667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 40500183 - 40500220
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  40500183 agggaaatgttaacgtgtgcctttaagacataagttaa 40500220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 430 - 458
Target Start/End: Complemental strand, 17696196 - 17696168
Alignment:
Q  430 ttagggaaatgttaacttgtgcccttaag 458  Q
    |||||||||||||||||||||||||||||    
T  17696196 ttagggaaatgttaacttgtgcccttaag 17696168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 434 - 469
Target Start/End: Complemental strand, 159267 - 159232
Alignment:
Q  434 ggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||||||||||||||||||||    
T  159267 ggaaatgttaacttgtgcccttaagacataagttaa 159232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 10361289 - 10361244
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||||||| ||| || |||||||||||||||    
T  10361289 agggaaatgttaacttgtgccctcaaggcacaagttaatgattcaa 10361244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 4993391 - 4993347
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||| |||||| |||||| ||||||||||||||||||    
T  4993391 gggaaatgttaatttgtgctcttaaggcataagttaatgattcaa 4993347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 427 - 469
Target Start/End: Complemental strand, 11753125 - 11753083
Alignment:
Q  427 aagttagggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  11753125 aagttagggaaatgttaacttgtgcccttgggacataagttaa 11753083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 477
Target Start/End: Complemental strand, 2557436 - 2557391
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||    
T  2557436 agggaaatgttaatttgtgctattaagacataagttaatgaatcaa 2557391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Original strand, 6383298 - 6383335
Alignment:
Q  430 ttagggaaatgttaacttgtgcccttaagacataagtt 467  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6383298 ttagggaaatgctaacttgtgcccttaaggcataagtt 6383335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 12622500 - 12622537
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||||||| || ||||||||||    
T  12622500 agggaaatgttaacttgtgcccttgaggcataagttaa 12622537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 467
Target Start/End: Original strand, 2588765 - 2588797
Alignment:
Q  435 gaaatgttaacttgtgcccttaagacataagtt 467  Q
    ||||||||||||||||||||||||||| |||||    
T  2588765 gaaatgttaacttgtgcccttaagacacaagtt 2588797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 435 - 468
Target Start/End: Original strand, 13719322 - 13719355
Alignment:
Q  435 gaaatgttaacttgtgcccttaagacataagtta 468  Q
    ||||||||||||||||||||||||||||||||||    
T  13719322 gaaatgttaacttgtgcccttaagacataagtta 13719355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 470
Target Start/End: Complemental strand, 14576086 - 14576049
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaat 470  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14576086 gggaaatgttaatttgtgcccttaagacataagttaat 14576049  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 478
Target Start/End: Complemental strand, 30873131 - 30873078
Alignment:
Q  425 aaaagttagggaaatgttaacttgtgcccttaagacataagttaatgattcaag 478  Q
    |||| ||||||||||| ||||||||||||||||| || |||||||||| |||||    
T  30873131 aaaatttagggaaatgctaacttgtgcccttaaggcacaagttaatgagtcaag 30873078  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 470
Target Start/End: Original strand, 10020692 - 10020730
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaat 470  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  10020692 agggaaatgttgacttgtgcccttaagacacaagttaat 10020730  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 477
Target Start/End: Complemental strand, 18334548 - 18334502
Alignment:
Q  431 tagggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||||||||||||||| | | || |||||||||||||||    
T  18334548 tagggaaatgttaacttgtgccctgagggcacaagttaatgattcaa 18334502  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 35075999 - 35075961
Alignment:
Q  431 tagggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  35075999 tagggtaatgttaacgtgtgcccttaagacataagttaa 35075961  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 437 - 477
Target Start/End: Original strand, 8233975 - 8234015
Alignment:
Q  437 aatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||||||||| || ||||| ||||||    
T  8233975 aatgttaacttgtgcccttaagacacaaattaataattcaa 8234015  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 15280804 - 15280849
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||||    
T  15280804 agggaaatgttaacttgtgccttcaaggcataagttaatgattcaa 15280849  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 433 - 477
Target Start/End: Complemental strand, 15279164 - 15279120
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    |||||||||||| || ||||||||||||| |||||||||||||||    
T  15279164 gggaaatgttaatttctgcccttaagacacaagttaatgattcaa 15279120  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 469
Target Start/End: Complemental strand, 52413999 - 52413960
Alignment:
Q  430 ttagggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  52413999 ttagggaaatgttaacttgtgcccttaaggcacaagttaa 52413960  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 30058347 - 30058384
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  30058347 agggaaatgttaacttgtgctcttgagacataagttaa 30058384  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Original strand, 45069872 - 45069909
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    ||||||||||||||||||||| |||| |||||||||||    
T  45069872 agggaaatgttaacttgtgccattaaaacataagttaa 45069909  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 469
Target Start/End: Complemental strand, 25901942 - 25901906
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||||||||||  ||||||||||||    
T  25901942 gggaaatgttaacttgtgcccttgggacataagttaa 25901906  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 34711071 - 34711035
Alignment:
Q  436 aaatgttaacttgtgcccttaagacataagttaatga 472  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  34711071 aaatgttaacttgtgcccttatgacacaagttaatga 34711035  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 433 - 477
Target Start/End: Original strand, 39275818 - 39275862
Alignment:
Q  433 gggaaatgttaacttgtgcccttaagacataagttaatgattcaa 477  Q
    ||||||||||||||||||| |||||  || |||||||||||||||    
T  39275818 gggaaatgttaacttgtgcgcttaaagcacaagttaatgattcaa 39275862  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 436 - 475
Target Start/End: Original strand, 31418045 - 31418084
Alignment:
Q  436 aaatgttaacttgtgcccttaagacataagttaatgattc 475  Q
    |||||||||||||||||||||||||| | |||||||||||    
T  31418045 aaatgttaacttgtgcccttaagacacatgttaatgattc 31418084  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 469
Target Start/End: Complemental strand, 5989486 - 5989449
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaa 469  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  5989486 agggaaatgttaacttatgcccttaagacacaagttaa 5989449  T

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Target: scaffold0657 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 432
Target Start/End: Original strand, 1150 - 1230
Alignment:
Q  352 aagtgggataacatcaaagcatatagattattgtgtggatagagtcatgattacatctcagaaatcatgaataaaaagtta 432  Q
    |||||||||| ||| |||||||| ||| |||| ||| | |||| | ||||| |||||||| | |||||| |||||||||||    
T  1150 aagtgggatatcattaaagcatagagactattatgtaggtagactgatgatcacatctcacagatcatggataaaaagtta 1230  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 100195 - 100155
Alignment:
Q  432 agggaaatgttaacttgtgcccttaagacataagttaatga 472  Q
    |||||||||||||||| |||||||||| || ||||||||||    
T  100195 agggaaatgttaacttatgcccttaaggcacaagttaatga 100155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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