View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_low_5 (Length: 466)
Name: NF14663_low_5
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 53346126 - 53345702
Alignment:
| Q |
18 |
gaaagtatatacagaaagaacnnnnnnncttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaatta |
117 |
Q |
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| T |
53346126 |
gaaagtatatacagaaagaacaaaaaaacttcaatctattaccagttggtcttgaaatagactagtaatgaagtatgaaaattcttgtctctaacaatta |
53346027 |
T |
|
| Q |
118 |
----taaaggttttagcactgtaaggactacacgtgatgtttaatctgaaagtaaaattaaattcattatcatgcattagctatattttcttgtgttttg |
213 |
Q |
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| T |
53346026 |
attataaaggttttagcactgtaaggactacacgtgatgtttaatctgaaa----------attcattatcatgcattagctatattttcttgtgttttg |
53345937 |
T |
|
| Q |
214 |
ctaccgatggatcaacccgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53345936 |
ctaccgatggatcaacccgtggccgggtggggtaggatgaaaatttcaacctatatttgtaattcaacccactccatgtctccatcccattttagacatc |
53345837 |
T |
|
| Q |
314 |
cggtaatcatattgtttgctatgtttgcgtctataactctaaaaaattattgttgtctccataataattattctacgttgctggagtaagggggaagaga |
413 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
53345836 |
cggtaatcatactgtttgctatgtttgcgtctataactctaaaaaattattgttgtctccataataattaatcttcgttgctggagtaagggggaagaga |
53345737 |
T |
|
| Q |
414 |
ggcagatataatcacttttaattgatatactctct |
448 |
Q |
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| T |
53345736 |
gacagatataatcacttttaattgatatactctct |
53345702 |
T |
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