View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_low_6 (Length: 459)
Name: NF14663_low_6
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_6 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 4 - 459
Target Start/End: Original strand, 36524860 - 36525315
Alignment:
| Q |
4 |
tctccgaggaagccatcataaggaaacagtacagaaaactcgcattgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagtt |
103 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36524860 |
tctccgaggaagcaatcataaagaaacagtacagaaaactcggattgctacttcatcttgataaaaataaatttactggtgcagaagctgcgttcaagtt |
36524959 |
T |
|
| Q |
104 |
gattggggaagccaatagcgtgttgactgaccaagcaaagtgatctttatacgacatgatagttaaagctcatgtgagtgatgcagtacctaagacttca |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36524960 |
gattggggaagccaatagcgtgttgactgaccaagcaaagtgatctttataggacatgatagttaaagctcatgtgagtgatgcagtacctaagacttca |
36525059 |
T |
|
| Q |
204 |
tcccatcactcaaatgcgaatgtatttgcagaaaatcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcccttggaatccccatc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525060 |
tcccatcactcaaatgcgaatgtatttgcagaaaatcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcccttggaatccccatc |
36525159 |
T |
|
| Q |
304 |
tgaatgctgcacaactgatattctggacaatgtgccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaa |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36525160 |
tgaatgctgcacaactgatattctggacaatgtgccaacactgtaaaggcaggttccagtaccccttaagtattatgaatatggtcataccctgtcacaa |
36525259 |
T |
|
| Q |
404 |
tttcaagaaaagctttaaagctcaagctattagtattagtgatcaacagcctgccc |
459 |
Q |
| |
|
|| ||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36525260 |
ttgtaagaaaaactttaaagctcaagctattggtattagtgatcaacagcctgccc |
36525315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 36531197 - 36531529
Alignment:
| Q |
6 |
tccgaggaagccatcataaggaaacagtacagaaaactcgcattgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttga |
105 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| || || ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
36531197 |
tccgaggaagcaatcataaagaaacagtacaagaagcttgcactgctacttcatcctgataaaaataaatctgctggtgcagaagctgctttcaagttga |
36531296 |
T |
|
| Q |
106 |
ttggggaagccaatagcgtgttgactgaccaagcaaagtgatctttatacgacatgatagttaaagctcatgtgagtgatgcagtacctaagacttcatc |
205 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||||| | | |||||||||||||| | |||||||| ||||| || | ||||| | ||||||| ||||| |
|
|
| T |
36531297 |
ttggggaagccaatagggtgttgagtgataaagcaacgcggtctttatacgacataaaggttaaagcccatgttagagctgcagcatctaagacctcatc |
36531396 |
T |
|
| Q |
206 |
ccatcactcaaatgcgaatgtatttgcagaaaatcaagttccaaatgccacaaaatacccggaaaaatattcttcaaa-tgtcc--cttggaatccccat |
302 |
Q |
| |
|
||||| ||| |||| ||| | ||||| |||||||||||| ||||| |||||| | | | |||||| ||||||||| | ||| ||| |||||||||| |
|
|
| T |
36531397 |
ccatccctctaatgggaa---acctgcagcaaatcaagttcctaatgcaacaaaacatcagaaaaaatgttcttcaaactctccttctttgaatccccat |
36531493 |
T |
|
| Q |
303 |
ctgaatgctgcacaactgatattctggacaatgtgc |
338 |
Q |
| |
|
||||| ||||||| | || |||||||||||||||| |
|
|
| T |
36531494 |
ctgaaacctgcacagccgacattctggacaatgtgc |
36531529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 4 - 159
Target Start/End: Complemental strand, 26306144 - 26305989
Alignment:
| Q |
4 |
tctccgaggaagccatcataaggaaacagtacagaaaactcgcattgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagtt |
103 |
Q |
| |
|
||||||||||||| ||||||| || ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |||||||| |
|
|
| T |
26306144 |
tctccgaggaagcaatcataaagacgcagtacagaaagctcgcactgctacttcatcctgataaaaataaattttctggtgctgaagctgctttcaagtt |
26306045 |
T |
|
| Q |
104 |
gattggggaagccaatagcgtgttgactgaccaagcaaagtgatctttatacgaca |
159 |
Q |
| |
|
|||||| ||||||||||| || |||| |||||||||| | |||||||||| |||| |
|
|
| T |
26306044 |
gattggagaagccaatagggttttgagtgaccaagcacaacgatctttatatgaca |
26305989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 230 - 365
Target Start/End: Complemental strand, 26305963 - 26305825
Alignment:
| Q |
230 |
tgcagaaaatcaagttccaaatgccacaaaatacccggaaaaatattcttcaaatgtcc---cttggaatccccatctgaatgctgcacaactgatattc |
326 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||| | ||||| || |||||| ||| |||||||||||||||| || |||||| ||| || |||| |
|
|
| T |
26305963 |
tgcagcaaatcaagttccaaatacaacaaaatactggaaaaaagttttttcaaacttcccttcttggaatccccatctcaaagctgcaaaacagacattc |
26305864 |
T |
|
| Q |
327 |
tggacaatgtgccaacactgtaaaggcaggttccagtac |
365 |
Q |
| |
|
|||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
26305863 |
tggacagtttgccaacattgtaatagcaggttccagtac |
26305825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 47090640 - 47090535
Alignment:
| Q |
49 |
tgctacttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagccaatagcgtgttgactgaccaagcaaagtgatc |
148 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||| | ||| || || || || |||| ||||||| ||||| | || |
|
|
| T |
47090640 |
tgctacttcatcctgataaaaataaatctgctggggcagaggctgctttcaagttgatcgtggatgctaacagagtattgagtgaccaaacaaagcgttc |
47090541 |
T |
|
| Q |
149 |
tttata |
154 |
Q |
| |
|
|||||| |
|
|
| T |
47090540 |
tttata |
47090535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 6791477 - 6791535
Alignment:
| Q |
57 |
catcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
115 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||||||| || ||| ||||||||||||| |
|
|
| T |
6791477 |
catcctgacaaaaacaagtttgctggtgcagaagctgcatttaagctgattggggaagc |
6791535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 49156858 - 49156796
Alignment:
| Q |
53 |
acttcatcctgataaaaataaatttgctggtgcagaagctgcgttcaagttgattggggaagc |
115 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| |||||||| || ||| ||||||| ||||| |
|
|
| T |
49156858 |
acttcatcctgataaaaacaagtttgccggtgctgaagctgcatttaagctgattggagaagc |
49156796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University