View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14663_low_8 (Length: 397)
Name: NF14663_low_8
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 47373457 - 47373094
Alignment:
| Q |
18 |
aatatagctcaaaacacatcnnnnnnngaaaccacaacagccacctatcttccccctcaacagaagtgttcctcattggttctgaatccaaagagtcttg |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
47373457 |
aatatagctcaaaacacatcaaaaaaagaaaccacaacagccacctatcttccccctcagcagaagtgttcctctttggttctgagtccaaagagtcttg |
47373358 |
T |
|
| Q |
118 |
aattgtgcacagaaaatcttggcaacgagagtggtactgacactgtagaaaacgacatattgttgtcttcaatgggaacaatggagcaaagacaaccttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47373357 |
aattgtgcacagaaaatcttggcaacgagagtggtactgacattgtagaaaacgacttattgttgtcttcaatgggaacaatggagcaaagacaaccttg |
47373258 |
T |
|
| Q |
218 |
ttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatctcttcatgttagaacccac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47373257 |
ttctcaagttttagcagctactaagaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatcttttcatgttagaacccac |
47373158 |
T |
|
| Q |
318 |
cgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47373157 |
cgtggagatggaaggttggtgattgaagtcactaaggtcccaccaagtacttcttgctttcaag |
47373094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 45 - 381
Target Start/End: Original strand, 47385499 - 47385838
Alignment:
| Q |
45 |
gaaaccacaacagccacctatcttccccctcaacagaagtgttcctcattggttctgaatccaaagagtcttgaattgtgcacagaaaatcttggcaacg |
144 |
Q |
| |
|
|||||||||||| |||||||| | | ||||||||||| ||||||| |||| | ||| ||||||||| |||||||| || || || |||||||| || | |
|
|
| T |
47385499 |
gaaaccacaacaaccacctatgtgcatcctcaacagaaacgttcctctttggctatgagtccaaagagccttgaattatgtacggagaatcttggtaatg |
47385598 |
T |
|
| Q |
145 |
agagtggtactgacactgtagaaaacgacatattgttgtcttcaatgggaacaatggag---caaagacaaccttgttctcaagttttagcagctactaa |
241 |
Q |
| |
|
| ||||| ||||||| ||||||||| ||||| |||||||||||||||||| |||||||| |||||| |||||||| || ||| ||| ||||||||| |
|
|
| T |
47385599 |
aaagtggcactgacattgtagaaaatgacatgttgttgtcttcaatgggagcaatggaggagcaaagagaaccttgtagtccagtattaatagctactaa |
47385698 |
T |
|
| Q |
242 |
gaaagtgaaaactcagaattttccaccacctttgacaaccataagaggatcagaatctcttcatgttagaacccaccgtggagatggaaggttggtgatt |
341 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||| || ||||||||||||||||||| ||||||| ||||||||| |||||| ||||| || ||| |
|
|
| T |
47385699 |
gaaaccaaaaatccataattttccaccacctttgacaacgatgagaggatcagaatctcttcgtgttagaccccaccgtgaagatggtaggttagtaatt |
47385798 |
T |
|
| Q |
342 |
gaagtcactaaggtcccaccaagtacttcttgctttcaag |
381 |
Q |
| |
|
|||||||| ||||||||||||||||| || || ||||||| |
|
|
| T |
47385799 |
gaagtcacaaaggtcccaccaagtacatcatgttttcaag |
47385838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University