View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14663_low_9 (Length: 396)
Name: NF14663_low_9
Description: NF14663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14663_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 14 - 396
Target Start/End: Original strand, 40663787 - 40664165
Alignment:
| Q |
14 |
aataatatcctacaaaatggaaaattggaaacccaatcctgcacggcacgtaacttgacatggggcagtgaagtcaaccatatgaaagtgatgtttttaa |
113 |
Q |
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| T |
40663787 |
aataaaatcctacaaaatggaaaattggaaacccaatcctgcacggcacgtaacttgacatggggcagtgaagtcaaccatatgaaagtgatgtttttaa |
40663886 |
T |
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| Q |
114 |
agaacaatctttacttctcaataaataaatgaatgaaatgcacnnnnnnnnnnnnnnncatggtcatggagggaccaaaccaaaacactcaccaactcat |
213 |
Q |
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| T |
40663887 |
agaacaatctttacttctcaataaataaatgaatgaaatgcaccacacacacac----catggtcatggagggaccaaaccaaaacactcaccaactcat |
40663982 |
T |
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| Q |
214 |
ttcccgaaacgtaaatgtgcagcattttgttttgttttgttcatctgaaagacctttgcttcccatagtccaacagtgacaaactattactagtaatact |
313 |
Q |
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| T |
40663983 |
ttccccaaacgtaaatgtgcagcattttgttttgttttgttcatctgaaagacctttgcttcccatactccaacagtgacaaactattactagtaatact |
40664082 |
T |
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| Q |
314 |
tttcaattaaattgaattgaattggatttggccacatcctcttctctctttattggttggagctgcttcaaaaatcgttcaac |
396 |
Q |
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| T |
40664083 |
tttcaattaaattgaattgaattggatttggccacatcctcttctctctttattggttggagctgcttcaaaaatcgttcaac |
40664165 |
T |
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