View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_high_25 (Length: 289)
Name: NF14664_high_25
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 28730894 - 28731163
Alignment:
| Q |
1 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28730894 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaaccgttattacgga |
28730993 |
T |
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| Q |
101 |
gcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaa |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
28730994 |
gcctgagcgttgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtgatcaggatgaaa |
28731093 |
T |
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| Q |
201 |
cggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttga |
270 |
Q |
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| T |
28731094 |
cggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttga |
28731163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 38121320 - 38121589
Alignment:
| Q |
1 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgga |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38121320 |
agatcatcaacagcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaaccgttattacgga |
38121419 |
T |
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| Q |
101 |
gcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaa |
200 |
Q |
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| T |
38121420 |
gccttaccattgcatctcgtagcatgaggcgcataatagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtgatcaggatgaaa |
38121519 |
T |
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| Q |
201 |
cggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttga |
270 |
Q |
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| T |
38121520 |
cggaaaggagagagaactcattctctcaacgtcgcaagaaaacggagaaagcttagaggcgaaaccttga |
38121589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38608803 - 38608534
Alignment:
| Q |
1 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38608803 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgga |
38608704 |
T |
|
| Q |
101 |
gcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaa |
200 |
Q |
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|||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
38608703 |
gcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaaa |
38608604 |
T |
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| Q |
201 |
cggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttga |
270 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |
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| T |
38608603 |
cggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttga |
38608534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 38793586 - 38793317
Alignment:
| Q |
1 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
38793586 |
agatcatcaacggcgaaaatagtcatgttgttgagagttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacgga |
38793487 |
T |
|
| Q |
101 |
gcctgagcgctgtgtctcgtagcatgaggcgcataatagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaa |
200 |
Q |
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|||||||| || |||||||||||||||||||| |||||||| ||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
38793486 |
gcctgagcattgcatctcgtagcatgaggcgcattatagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaaa |
38793387 |
T |
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| Q |
201 |
cggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttga |
270 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |
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| T |
38793386 |
cggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttga |
38793317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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