View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14664_high_27 (Length: 284)

Name: NF14664_high_27
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14664_high_27
NF14664_high_27
[»] chr5 (13 HSPs)
chr5 (5-239)||(41369960-41370194)
chr5 (1-212)||(41317118-41317329)
chr5 (1-212)||(41325182-41325393)
chr5 (1-211)||(41333092-41333302)
chr5 (18-206)||(31177513-31177701)
chr5 (18-197)||(31187585-31187764)
chr5 (72-206)||(41367342-41367476)
chr5 (1-189)||(41287284-41287472)
chr5 (18-197)||(31226014-31226193)
chr5 (1-151)||(41311323-41311473)
chr5 (1-111)||(41329159-41329269)
chr5 (72-121)||(41329543-41329592)
chr5 (1-142)||(41337899-41338040)
[»] chr4 (1 HSPs)
chr4 (1-152)||(17248447-17248598)
[»] chr3 (1 HSPs)
chr3 (81-137)||(22941642-22941698)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 41369960 - 41370194
Alignment:
Q  5 tgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttccaat 104  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41369960 tgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagcttcccaat 41370059  T
Q  105 gaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgtatttgat 204  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41370060 gaaatgaagaatgaagaattggatatgactgaatcatttgggattacagcagtaagaaaatatgatttatgcttgattcctattattcgtcgtatttgat 41370159  T
Q  205 atgtattgcaagtaacaaggggtaatcaagaacac 239  Q
    |||||||||||||||||||||||||||||||||||    
T  41370160 atgtattgcaagtaacaaggggtaatcaagaacac 41370194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41317118 - 41317329
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || ||||||||||||||||| |||   |||| | | || || |||||| ||||||||||||  |||||||| |||||||||||||||||| |    
T  41317118 ttggtgctggaaggaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcc 41317217  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgtatt 200  Q
    ||||| ||||||||||||||| |||||||||||||| ||||| |||||||| ||||  |||||| | | | ||||||| ||||||||   ||||||| ||    
T  41317218 caatggaatgaagaatgaagaattggatatgactgagtcatttgggattactgcaggtagaaaacacgatctatgcttaattcctatccctcgtcgtttt 41317317  T
Q  201 tgatatgtattg 212  Q
    | ||||||||||    
T  41317318 taatatgtattg 41317329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 41325182 - 41325393
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || || ||||||||||| || |||   |||| | |||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  41325182 ttggtgctggaagaaggatgtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcc 41325281  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgtatt 200  Q
    |||| ||||||||||||||||  | |||||||| || ||||| |||||||| ||||  |||||  |   | ||||||| |||||||||| ||||||| ||    
T  41325282 caataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgcaggtagaaagcacaatctatgcttaattcctattactcgtcgtctt 41325381  T
Q  201 tgatatgtattg 212  Q
    | ||||||||||    
T  41325382 taatatgtattg 41325393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 41333092 - 41333302
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||| ||||||||||||||||||| |    
T  41333092 ttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattggaagcttcc 41333191  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgtatt 200  Q
    |||| ||||||||||||||||  | |||||||| || ||||| |||||||| | || ||||||  | | | |||| || |||||||||| ||||||| ||    
T  41333192 caataaaatgaagaatgaagaactagatatgaccgagtcatttgggattactgtaggaagaaagcacgatctatgtttaattcctattactcgtcgtctt 41333291  T
Q  201 tgatatgtatt 211  Q
    | |||||||||    
T  41333292 taatatgtatt 41333302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 31177701 - 31177513
Alignment:
Q  18 atgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttccaatgaaatgaagaatg 117  Q
    ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||||||||||| | |||| |||||||||||    
T  31177701 atgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatg 31177602  T
Q  118 aagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgtatttgatat 206  Q
    ||||  | ||||||||||| ||||| ||| || | | |||||||||| |||   |||||||||||||||| | ||||||| ||| ||||    
T  31177601 aagaactagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgattcctataactcgtcgtctttaatat 31177513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 31187764 - 31187585
Alignment:
Q  18 atgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttccaatgaaatgaagaatg 117  Q
    ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||||||||||| | |||| |||||||||||    
T  31187764 atgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatg 31187665  T
Q  118 aagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgt 197  Q
    ||||  | ||||||||||| ||||| |||||  |   || ||||||| |||   |||||||||||||||||| |||||||    
T  31187664 aagaactagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgattcctattactcgtcgt 31187585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 41367342 - 41367476
Alignment:
Q  72 ttactttaccactttgattggaagctttccaatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttt 171  Q
    ||||||||||| ||||||||||||||| | |||| ||||||||||||||| || |||||||| || ||||| ||| || ||| || ||||||| |||  |    
T  41367342 ttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattagatatgacggagtcatttgggcttgcagtaggaagaaaacatgact 41367441  T
Q  172 tatgcttgattcctattattcgtcgtatttgatat 206  Q
    |||||||||||||| | |||||||||  |||||||    
T  41367442 tatgcttgattcctttcattcgtcgtccttgatat 41367476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 41287284 - 41287472
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || ||||||||||| |||||||||   || ||| |||| ||||||||| | |||||||||   |||||||| ||||||||||||||||||      
T  41287284 ttggtgctggaaggaggatgtgcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgattggaagcttct 41287383  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctatta 189  Q
    ||||| |||||||  ||||||  | ||||||||||| ||||| |||||||| | || ||||||| |||   |||| || ||||||||||    
T  41287384 caatggaatgaagtgtgaagaacttgatatgactgagtcatttgggattactgtaggaagaaaacatgacctatgattaattcctatta 41287472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 31226014 - 31226193
Alignment:
Q  18 atgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttccaatgaaatgaagaatg 117  Q
    ||||||||||||||    |||||| || | ||| ||||| |||||||||||   ||||||||||||||||||||||||||| | |||| |||||||||||    
T  31226014 atgtgtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatg 31226113  T
Q  118 aagagttggatatgactgaatcattagggattacagcagtaagaaaatatgttttatgcttgattcctattattcgtcgt 197  Q
    ||||  | ||||||||||| ||||| ||| || | | || ||||||| |||   | |||||||||||||| | |||||||    
T  31226114 aagaactagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgattcctatcactcgtcgt 31226193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 41311323 - 41311473
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || |||||||||||||| || |||   |||| |||||| ||| ||||| | |||||||||   ||||||||||  ||||||||||||||| |    
T  41311323 ttggtgctggaaggaggatgtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgattggaagcttcc 41311422  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattac 151  Q
    |||| ||||||||||||||||  | |||||| |||| ||||| ||||||||    
T  41311423 caataaaatgaagaatgaagaactagatatggctgagtcatttgggattac 41311473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41329159 - 41329269
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || || |||||||||||||| |||   |||| | |||| || |||||| ||||||||||||  |||||||| |||||||||||||||||| |    
T  41329159 ttggtgctggaagaaggatgtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcc 41329258  T
Q  101 caatgaaatga 111  Q
    ||||| |||||    
T  41329259 caatggaatga 41329269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 41329543 - 41329592
Alignment:
Q  72 ttactttaccactttgattggaagctttccaatgaaatgaagaatgaaga 121  Q
    ||||||||  |||||||||| ||||||||||||| |||||| ||||||||    
T  41329543 ttactttatgactttgattgaaagctttccaatggaatgaataatgaaga 41329592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 41337899 - 41338040
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || || |||||||||||||| |||   |||| | | || || |||||| ||||||||||||  || ||||| |||||||||||||| ||| |    
T  41337899 ttggtgctggaagaaggatgtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattggaaacttcc 41337998  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcatt 142  Q
     |||| |||||   || ||||  | |||||||||||||||||    
T  41337999 aaatggaatgagccatcaagaacttgatatgactgaatcatt 41338040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 17248598 - 17248447
Alignment:
Q  1 ttggtgcagggaggaggatgtgtccaggcattatgtttggcctacctaacgttgagttgcctcttgctagtttactttaccactttgattggaagctttc 100  Q
    ||||||| || |||||||| ||||| ||||||   |||||| |||| ||| |||||||||||||||||   ||||||||||| ||||||||||||||| |    
T  17248598 ttggtgctggaaggaggatttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcc 17248499  T
Q  101 caatgaaatgaagaatgaagagttggatatgactgaatcattagggattaca 152  Q
    |||||||||||||||||||||  | |||||||| || ||||| |||||||||    
T  17248498 caatgaaatgaagaatgaagatctagatatgaccgagtcatttgggattaca 17248447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 137
Target Start/End: Original strand, 22941642 - 22941698
Alignment:
Q  81 cactttgattggaagctttccaatgaaatgaagaatgaagagttggatatgactgaa 137  Q
    |||||||||||||| ||| ||||||| ||||| |||||||| ||||| |||| ||||    
T  22941642 cactttgattggaaacttcccaatgagatgaaaaatgaagatttggacatgagtgaa 22941698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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