View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_high_39 (Length: 244)
Name: NF14664_high_39
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_high_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 28235146 - 28234921
Alignment:
| Q |
16 |
ccttgtagtactatttgattatttcttgctnnnnnnntaaatatatgtacctgataaatttcaacgcgttcacaagcattaaatgaatgcacatggatca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28235146 |
ccttgtagtactatttgattatttcttgctaaaaaaataaatatatgtacctgataaatttcaacgcgttcacaagcattaaatgaatgcacatggatcg |
28235047 |
T |
|
| Q |
116 |
atcnnnnnnnnnnnngggcacatggtcatcaagtattggatgtcagcagcatcttcccaaacaagaaagtagaaaatgtccaatagaaaatttaatattc |
215 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28235046 |
gtcaaaaacaaaaaagggcacatggtcatcaagtattggatgtcagcagcatcttcccaaacaagaaagtagaaaatgtccaatagaaaatttaatattc |
28234947 |
T |
|
| Q |
216 |
aatacagctttttattttagaataat |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
28234946 |
aatacagctttttattttagaataat |
28234921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University