View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_high_4 (Length: 659)
Name: NF14664_high_4
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 215 - 505
Target Start/End: Original strand, 41456338 - 41456630
Alignment:
| Q |
215 |
atatatagacttttcctccttcacatgtaaattt-atcttgtaagctgactcctctgatagttttagacatcaagttacttagtcttttgcttttcggta |
313 |
Q |
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| T |
41456338 |
atatatggacttttcctccttcacatgtaaattttatcttgtaagctgactcctttgatggttttagacatcaagttgcttagtcttttgcttttcgatg |
41456437 |
T |
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| Q |
314 |
ttttccttttgatnnnnnnnn-tcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
412 |
Q |
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| T |
41456438 |
ttttccttttgataaaaaaaaatcatttgcacacacaattaatacaatcacataaaaatacatataatttaatcaaattagaaatatatagttttaattc |
41456537 |
T |
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| Q |
413 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgttctcaaacacttgtcattgtataaaacttcctatcatttaacatca |
505 |
Q |
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| T |
41456538 |
cttttctcttcctgcatttttcatatatatgtgtgcctaactagtgtgctcaaacacttgtcatcgtataaaacttcctatcatttaacatca |
41456630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 41456082 - 41456292
Alignment:
| Q |
9 |
agaagcaaaggcacagatgaagttgataatccaacctaaaaaatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatacgaaaaatatt |
108 |
Q |
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| T |
41456082 |
agaatcaaaggcatagatgaagttgataatccaacctcaaagatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatatgaaaaatatt |
41456181 |
T |
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| Q |
109 |
tgggcacgcaaacaaatacaaacttaaatagaaattatttggtcactacatttaacagaaaatacttgggaggtttcctttt-ccgtacattgagaaaag |
207 |
Q |
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| T |
41456182 |
taggcacgcgcacaaatacaaacttaaataaaaattatttggtcactacatttaacagaaaatacttgggaggttttcttttcccgtacattgagaaaat |
41456281 |
T |
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| Q |
208 |
gtaatgaatat |
218 |
Q |
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| T |
41456282 |
gtaatgaatat |
41456292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 537 - 643
Target Start/End: Original strand, 41456662 - 41456768
Alignment:
| Q |
537 |
gtgagtacctaaatgtttttcatctaaggttgtgttcgattaagtatttgtcatatgtttttgccttgttatatttggtctataaattcgagctttgtct |
636 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
41456662 |
gtgagtacccaaatatttttcatctaaggttgtgttcgattaagtatttctcatatgtttttccctcgttatatttggtctataaattcgagctttgtct |
41456761 |
T |
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| Q |
637 |
ataaatg |
643 |
Q |
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| T |
41456762 |
ataaatg |
41456768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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