View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_high_5 (Length: 580)
Name: NF14664_high_5
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 32 - 567
Target Start/End: Original strand, 50834464 - 50835016
Alignment:
| Q |
32 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcatttggagttttgaatgtcttttattgactttgcattaatg |
131 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50834464 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcatttggagttttgaatgtcttttattgactttgcattagtg |
50834563 |
T |
|
| Q |
132 |
ttgagctttgcttt-gatcatcaatcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaagcccataacca |
230 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50834564 |
ttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaagcccataacca |
50834663 |
T |
|
| Q |
231 |
tatatttagtgtgtctatgtaatttctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggataatttaaaacaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || |
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| T |
50834664 |
tatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggataatttgaaataa |
50834763 |
T |
|
| Q |
320 |
tcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttct |
419 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834764 |
tcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttct |
50834863 |
T |
|
| Q |
420 |
tgaaattcaaaggttgttctatctttctttcttattttgttacattannnnnnngggtcatgaatgatgagttcaaacatttttctgaacactttatcca |
519 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50834864 |
tgaaattccaaggttgttctatctttctttcttatgttgttacattatttttttgggtcatgaatgatgagtacaaacatttttctgaacactttatcca |
50834963 |
T |
|
| Q |
520 |
gatttctg-----tttatagtggctaatggttttcatggttgtttagtattat |
567 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
50834964 |
gatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattat |
50835016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 32 - 567
Target Start/End: Complemental strand, 50841389 - 50840837
Alignment:
| Q |
32 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcatttggagttttgaatgtcttttattgactttgcattaatg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
50841389 |
cacttggggaatgaatttgctttctcggtttgtaagaacaagaggtgtgtaatttcttcatttggagttttgaatgtcttttattgactttgcattagtg |
50841290 |
T |
|
| Q |
132 |
ttgagctttgcttt-gatcatcaatcccgtctttccatgggcacattctcctgtacctttcacatggattcttggcatcaattctccaagcccataacca |
230 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50841289 |
ttgagctttgcttttgatcatcaatcccgtctttccatgggcatattctcctgtacctttcacatggattcttggcatcaattctccaagcccataacca |
50841190 |
T |
|
| Q |
231 |
tatatttagtgtgtctatgtaatttctattta--------ttagtcaatccca---ttctgtttcagagttataaatgtattctggataatttaaaacaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || |
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|
| T |
50841189 |
tatatttagtgtgtctatgtaatttctatttacataattattagtcaatcccaatattctgtttcagagttataaatatattctggataatttgaaataa |
50841090 |
T |
|
| Q |
320 |
tcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttct |
419 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50841089 |
tcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggtttct |
50840990 |
T |
|
| Q |
420 |
tgaaattcaaaggttgttctatctttctttcttattttgttacattannnnnnngggtcatgaatgatgagttcaaacatttttctgaacactttatcca |
519 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
50840989 |
tgaaattccaaggttgttctatctttctttcttatgttgttacattatttttttgggtcatgaatgatgagtacaaacatttttctgaacactttatcca |
50840890 |
T |
|
| Q |
520 |
gatttctg-----tttatagtggctaatggttttcatggttgtttagtattat |
567 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
50840889 |
gatttctgtgtaatttatagtggttaatggttttcatggttgtttagaattat |
50840837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 318 - 567
Target Start/End: Original strand, 11729632 - 11729886
Alignment:
| Q |
318 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11729632 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
11729731 |
T |
|
| Q |
418 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattannnnnnngggtcatgaatgatgagttcaaacatttttctgaacactttatc |
517 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11729732 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattatttttttaggtcatgaatgatgagtacaaacatttttctgaacactttatc |
11729831 |
T |
|
| Q |
518 |
cagatttct-----gtttatagtggctaatggttttcatggttgtttagtattat |
567 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11729832 |
cagatttctttgtaatttatagtggttaatggttttcatggttgtttagtattat |
11729886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 318 - 567
Target Start/End: Original strand, 23739944 - 23740198
Alignment:
| Q |
318 |
aatcagtttgagtcgtgaattttgttcattttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23739944 |
aatcagtttgagtcgtgaattttgttcatgttacttttctctgtcacttcttgcactatccatctattttcttttaaaaagtttcatggtctcttggttt |
23740043 |
T |
|
| Q |
418 |
cttgaaattcaaaggttgttctatctttctttcttattttgttacattannnnnnngggtcatgaatgatgagttcaaacatttttctgaacactttatc |
517 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
23740044 |
cttgaaattccaaggttgttctatctttctttcttattttgttacattatttttttaggtcatgaatgatgagtacaaacatttttctgaacactttatc |
23740143 |
T |
|
| Q |
518 |
cagatttct-----gtttatagtggctaatggttttcatggttgtttagtattat |
567 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
23740144 |
cagatttctttgtaatttatagtggttaatggttttcatggttgtttagtattat |
23740198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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