View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_1 (Length: 874)
Name: NF14664_low_1
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_1 |
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| [»] scaffold0024 (5 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 503 - 855
Target Start/End: Original strand, 30991 - 31343
Alignment:
| Q |
503 |
ggaggaaagtcactactggtcaaccaatggaggtacctgtagacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattggat |
602 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30991 |
ggaggaaagtcactactggtcaaccaatggaggtacctatagacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattggat |
31090 |
T |
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| Q |
603 |
agccaaactcgtcgcttgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaagacgaatctattcatgattaaaatggaaac |
702 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31091 |
agccaaactcgtcgcttgtggtggccgtcatactttggcaatagtagaatggaaagatgatgaatctaaagctgaatctattcatgattaaaatggaaac |
31190 |
T |
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| Q |
703 |
tggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatgaggtgtgtttgggtaaacaacttaaataagcgtttattgaatagac |
802 |
Q |
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| T |
31191 |
tagtaagtagattaggctaatgactgatttggaactcagtccatgtgtgatatgaggtgtgtttcggcaaacaacttaaataagcgtttattgaaccgac |
31290 |
T |
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| Q |
803 |
attcatcgcaaaagatctcatgtataagttgtttctaggattgaagagctttt |
855 |
Q |
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||| || || |||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
31291 |
atttattgcgtaagagctcatgtataagtcgtttctaggattgaagagctttt |
31343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 503 - 855
Target Start/End: Original strand, 65975 - 66315
Alignment:
| Q |
503 |
ggaggaaagtcactactggtcaaccaatggaggtacctgta--gacatccctcctccacagaatctcggtgacgctgacggtgaagctgagggaaattgg |
600 |
Q |
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| T |
65975 |
ggaggaaagtcactactggtcaaccaatggaggtacctatatagacatccctcctccacagaatctcggtgatgctgacggtgaagctgagggaaattgg |
66074 |
T |
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| Q |
601 |
atagccaaactcgtcgcttgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaagacgaatctattcatgattaaaatggaa |
700 |
Q |
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| T |
66075 |
atagccaaactcgtcgattgtggtggccgccatactttggcaatagtagaatggaaagatgatgaatctaaagacgaatctattcatgattaaaatggaa |
66174 |
T |
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| Q |
701 |
actggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatgaggtgtgtttgggtaaacaacttaaataagcgtttattgaatag |
800 |
Q |
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| T |
66175 |
actggtaagtagattaggttaatggctgatttggaactcggtccatgtgtgatatg--------------aaacaacttaaataagcgtttattgaatag |
66260 |
T |
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| Q |
801 |
acattcatcgcaaaagatctcatgtataagttgtttctaggattgaagagctttt |
855 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
66261 |
acattcatcgcataagagctcatgtataagttgtttctaggattgaagagctttt |
66315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 33 - 504
Target Start/End: Original strand, 30427 - 30878
Alignment:
| Q |
33 |
gaaacaatagtcactttgatagtggaaatggtttcgccttcacaaatagcgctttctaattatgtaattttttcttatcttatcatctctaattagcttc |
132 |
Q |
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||||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30427 |
gaaacaacagtcactttcatagtggaaatgatttcaccttcacaaatagcgctttctaattatgtacttttttcttatcttatcatctctaattagcttc |
30526 |
T |
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| Q |
133 |
cattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctctcagggtcggctgtaaaatagtcattagtgtttt |
230 |
Q |
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| T |
30527 |
cattgaattacataatgccataa-ggtgttagcttaacgtcataacc-tcaagagataaagttctctcagggtcgattgtaaaatagtcattagtgtttt |
30624 |
T |
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| Q |
231 |
tctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcctgtggaggtactcattctgttgcattatcccga |
330 |
Q |
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| T |
30625 |
tttactaataatagttatgactagtt-atgctgaaatatctatttattggtttgtggtcaggtgtcttgtggaggtactcattctgttgcattaacccga |
30723 |
T |
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| Q |
331 |
gatgggcgcatattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaat |
430 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||||||| |||||||||| ||||||| |
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| T |
30724 |
gatgggcgcatattttctgtaagtagtttgctcaccatctcaatt----ttctttgccat-----gttttgtttaatctgaaataaaagt--caccaaaa |
30812 |
T |
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| Q |
431 |
cttgatatcccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaattttcgg |
504 |
Q |
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| T |
30813 |
tttgatattccctttata--------tattgatattatagattagtagcagttttcattctgtgaatttttcgg |
30878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 340 - 504
Target Start/End: Original strand, 65702 - 65862
Alignment:
| Q |
340 |
atattttctgtaagtagtttgctcaccatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
439 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
65702 |
atattttctgtaagtagttt----accatctcaattttcattctgttgcattattggttttgtttaatcttaaataaaagtcacaccaaatcttgatatc |
65797 |
T |
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| Q |
440 |
ccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaattttcgg |
504 |
Q |
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| T |
65798 |
ccctttatatattgaattattgatattatagattagtagcaattttcattctgtgaaattttcgg |
65862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 11 - 80
Target Start/End: Original strand, 65635 - 65704
Alignment:
| Q |
11 |
gtagcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
80 |
Q |
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| T |
65635 |
gtagcataggtatcatggttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
65704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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